View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20553_high_52 (Length: 237)
Name: NF20553_high_52
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1154849 - 1154628
Alignment:
| Q |
1 |
ttgggaaagattaggtactttcttggcgttg-aagtaattcaaaatactgatggcattttccattagtcaaaaaagatatgtgatggaagtattggaaag |
99 |
Q |
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| T |
1154849 |
ttgggaaagattaggtactttcttggcgttggaagtaattcaaaagactgatggcatttttcattagtcaaaaaagatatgtgatggaagtattggagag |
1154750 |
T |
|
| Q |
100 |
atttggaatggacaaaagcaattctgtccactatccaactgctcttggacagaagcttcgaaaggatcatgatggcatgaagattgatagtacttactaa |
199 |
Q |
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| T |
1154749 |
atttggaatggacaaaagcaattctgtccactatccaactgctcttggacagaagcttcgaaaggatcatgatggcatgaagattgatagtacttactaa |
1154650 |
T |
|
| Q |
200 |
acatcttttcttatcacaatag |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
1154649 |
acatcttttcttatcacaatag |
1154628 |
T |
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