View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20553_high_7 (Length: 516)

Name: NF20553_high_7
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20553_high_7
NF20553_high_7
[»] chr4 (14 HSPs)
chr4 (47-264)||(832379-832604)
chr4 (260-400)||(832107-832247)
chr4 (455-516)||(832311-832368)
chr4 (178-234)||(10464584-10464640)
chr4 (337-394)||(6388207-6388264)
chr4 (193-234)||(10482487-10482528)
chr4 (318-394)||(10464217-10464293)
chr4 (318-394)||(10475155-10475231)
chr4 (178-234)||(10475519-10475575)
chr4 (178-233)||(8443169-8443223)
chr4 (200-234)||(10468348-10468382)
chr4 (337-394)||(6372412-6372469)
chr4 (337-394)||(11971028-11971085)
chr4 (318-394)||(10482129-10482205)
[»] chr7 (1 HSPs)
chr7 (337-394)||(13416957-13417014)
[»] chr2 (2 HSPs)
chr2 (337-390)||(554443-554496)
chr2 (316-371)||(25377020-25377075)
[»] chr8 (1 HSPs)
chr8 (315-394)||(42846471-42846551)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 47 - 264
Target Start/End: Complemental strand, 832604 - 832379
Alignment:
Q  47 atatagaaaatatcattatctaagttacaataagcataaataacaagacaatggtcaataaataattactcaacaattaataccgagaagctaattaagc 146  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  832604 atatagaaaatatcatcatctaagttacaataagcataaataacaagaaaatggtcaataaataataactcaacaattaataccgacaagctaattaagc 832505  T
Q  147 agcaaagcaatcacacaatctattattataacaacataaacgaagta--------acatagattcaaacaagtaaaatgtggaagagaaactcactcact 238  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||        ||||||||||||||||| |||||||||||||||||||||||||||    
T  832504 agcaaagcaatcacacaatctattattataacaacaaaaacgaagtaattaacatacatagattcaaacaagaaaaatgtggaagagaaactcactcact 832405  T
Q  239 tttaataaggctgcaccaaactttca 264  Q
    |||||||| |||||||||||||||||    
T  832404 tttaataaagctgcaccaaactttca 832379  T

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Target: chr4; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 260 - 400
Target Start/End: Original strand, 832107 - 832247
Alignment:
Q  260 tttcacttgatctgtccacagacacatatatacactcagctgttacaagccaattgaacttgtggttttgagggaaagtctttgtttttgtcatgatttt 359  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  832107 tttcacttgatctctccacagacacatacatacactcagctgttacaagccaattgaacttgtggttttgagggaaagtctttgtttttgtcatgatttt 832206  T
Q  360 gagaaaacccatcttatgatatggcaaatgaaggagtcttg 400  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  832207 gagaaaacccatcttatgatatggcaaatgaaggagtcttg 832247  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 455 - 516
Target Start/End: Original strand, 832311 - 832368
Alignment:
Q  455 acaggcgatagagtagtgagaattggaggaattaagtaagggtatgatgtggtatgaggccc 516  Q
    |||||||||||||||||||||||||||||    ||||||||||||||||||||  |||||||    
T  832311 acaggcgatagagtagtgagaattggagg----aagtaagggtatgatgtggtccgaggccc 832368  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 10464640 - 10464584
Alignment:
Q  178 caacataaacgaagtaacatagattcaaacaagtaaaatgtggaagagaaactcact 234  Q
    ||||||||| ||||||| ||| |||| ||||||||| ||||||||||||||||||||    
T  10464640 caacataaatgaagtaatataaattctaacaagtaatatgtggaagagaaactcact 10464584  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 394
Target Start/End: Original strand, 6388207 - 6388264
Alignment:
Q  337 gtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 394  Q
    |||||||||||||||||||||||||| |||| |||  | | |||||||||||||||||    
T  6388207 gtctttgtttttgtcatgattttgaggaaactcattctgttatatggcaaatgaagga 6388264  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 10482528 - 10482487
Alignment:
Q  193 aacatagattcaaacaagtaaaatgtggaagagaaactcact 234  Q
    |||||| |||||||||||||| ||||||||||||||||||||    
T  10482528 aacataaattcaaacaagtaatatgtggaagagaaactcact 10482487  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 394
Target Start/End: Original strand, 10464217 - 10464293
Alignment:
Q  318 cttgtggttttgagggaaagtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 394  Q
    ||||||||||||| |||  |||||||||||||| |||||||  | || |||||| || | |||||||||||||||||    
T  10464217 cttgtggttttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaagga 10464293  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 394
Target Start/End: Original strand, 10475155 - 10475231
Alignment:
Q  318 cttgtggttttgagggaaagtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 394  Q
    ||||||||||||| |||  |||||||||||||| |||||||  | || |||||| || | |||||||||||||||||    
T  10475155 cttgtggttttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaagga 10475231  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 10475575 - 10475519
Alignment:
Q  178 caacataaacgaagtaacatagattcaaacaagtaaaatgtggaagagaaactcact 234  Q
    ||||||| | ||| ||| ||| |||||||||||||| ||||||||||||||||||||    
T  10475575 caacatacatgaaataatataaattcaaacaagtaatatgtggaagagaaactcact 10475519  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 8443169 - 8443223
Alignment:
Q  178 caacataaacgaagtaacatagattcaaacaagtaaaatgtggaagagaaactcac 233  Q
    ||||||| ||||||||||| | |||||||||||| |||||||||| ||||||||||    
T  8443169 caacatacacgaagtaacaaaaattcaaacaagt-aaatgtggaatagaaactcac 8443223  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 10468382 - 10468348
Alignment:
Q  200 attcaaacaagtaaaatgtggaagagaaactcact 234  Q
    |||||||||||||| ||||||||||||||||||||    
T  10468382 attcaaacaagtaatatgtggaagagaaactcact 10468348  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 394
Target Start/End: Original strand, 6372412 - 6372469
Alignment:
Q  337 gtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 394  Q
    |||||||||||||| || | | |||| |||||||| |||| |||||||||||||||||    
T  6372412 gtctttgtttttgtaataactatgaggaaacccattttattatatggcaaatgaagga 6372469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 11971085 - 11971028
Alignment:
Q  337 gtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 394  Q
    |||||||||||| ||||||||||||  |||| ||| || | |||||||||||||||||    
T  11971085 gtctttgtttttctcatgattttgaacaaactcattttgttatatggcaaatgaagga 11971028  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 394
Target Start/End: Original strand, 10482129 - 10482205
Alignment:
Q  318 cttgtggttttgagggaaagtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 394  Q
    |||| |||||||| |||  ||||||||||| ||||||||| |||| ||||  || || | |||||||||||||||||    
T  10482129 cttgcggttttgatggattgtctttgttttggtcatgattatgaggaaacttattttgttatatggcaaatgaagga 10482205  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 13417014 - 13416957
Alignment:
Q  337 gtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 394  Q
    |||||||||||| | |||||||| |||||||| || |||| |||||||||||||||||    
T  13417014 gtctttgtttttcttatgattttaagaaaacctattttatcatatggcaaatgaagga 13416957  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 554443 - 554496
Alignment:
Q  337 gtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatga 390  Q
    |||||||||||| ||| |||||||||  |||||||||||| |||||||||||||    
T  554443 gtctttgtttttctcacgattttgagggaacccatcttattatatggcaaatga 554496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 25377020 - 25377075
Alignment:
Q  316 aacttgtggttttgagggaaagtctttgtttttgtcatgattttgagaaaacccat 371  Q
    ||||||||||||||| |||  |||||||||||||||||||||| ||| ||| ||||    
T  25377020 aacttgtggttttgacggactgtctttgtttttgtcatgatttggaggaaaaccat 25377075  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 394
Target Start/End: Complemental strand, 42846551 - 42846471
Alignment:
Q  315 gaacttgtggttttgagggaaagtctttgtttttgt-catgattttgagaaaacccatcttatgatatggcaaatgaagga 394  Q
    |||||||||||||||||||| | ||||  ||||| | |||||||||||| |||||||| || | || ||||||||||||||    
T  42846551 gaacttgtggttttgagggacactcttaattttttttcatgattttgaggaaacccattttgttatttggcaaatgaagga 42846471  T

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