View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20553_low_1 (Length: 651)
Name: NF20553_low_1
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_low_1 |
 | |
|
| [»] scaffold0684 (1 HSPs) |
| | |
|
| [»] scaffold0163 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 541; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 19 - 619
Target Start/End: Complemental strand, 21493598 - 21492998
Alignment:
| Q |
19 |
gagattcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21493598 |
gagattcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatgg |
21493499 |
T |
|
| Q |
119 |
tcttttctttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttggccataatagttattat--cacaatttccatgcatgca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
21493498 |
tcttttctttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttagccatactagttattatatcacaatttccatgcatgca |
21493399 |
T |
|
| Q |
217 |
tagataacgtatacgtagaagaccaatcatgccaaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcag |
316 |
Q |
| |
|
|| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21493398 |
tacataacgtaca--tagaagaccaatcatgccaaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcag |
21493301 |
T |
|
| Q |
317 |
ataaaccaaccttaacattttctgggagaacagctttcaaatcaacagcatgagcaatagtagaaattggagcattgttgttagtggcagcaaccatcaa |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
21493300 |
ataaaccaaccttaacattttctgggagaacagctttcaaatcaacagcatgagcaatagtagaaattggaccattgttgttagtggaagcaaccatcaa |
21493201 |
T |
|
| Q |
417 |
ttgtttagagagagggtcatagattatacttactttgactaatgacccacttaccttattccatggtgttgtcctgcgggaaattaaagagttaacatta |
516 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
21493200 |
ttgtttagagagagggtcatagattatatttactttgactaatgacccacttaccttattccatgttgttgtcctgcgggaaattaaagagttaacatca |
21493101 |
T |
|
| Q |
517 |
attccaatatgtggatacttgggatcatactgattggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcccatcaactactccga |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21493100 |
attccaatatgtggatacttgggatcatactgattggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcacatcaactactccga |
21493001 |
T |
|
| Q |
617 |
gat |
619 |
Q |
| |
|
||| |
|
|
| T |
21493000 |
gat |
21492998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 154 - 622
Target Start/End: Complemental strand, 21483309 - 21482843
Alignment:
| Q |
154 |
tcacaatctagtatggacttttgtttggc----cataatagttattatcacaatttccatgcatgcatagataacgtatacgtagaagaccaatcatgcc |
249 |
Q |
| |
|
|||||||||||||||| ||||||||| || |||| |||||||||||||||| |||||||||||||| |||||||| |||| ||||||||||| |
|
|
| T |
21483309 |
tcacaatctagtatggtcttttgtttagctagccatactagttattatcacaatctccatgcatgcatacataacgta------gaagtccaatcatgcc |
21483216 |
T |
|
| Q |
250 |
aaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcagataaaccaaccttaacattttctgggagaacag |
349 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| |||||||||| |||||||| || |||||||||||||||| |||| || | ||||||||||| |
|
|
| T |
21483215 |
aaggtagaagtgaaagaccacgaatgaatgttttgcaattggcggccgccagatgtaactgttgcagataaaccaaccctaacgttctgtgggagaacag |
21483116 |
T |
|
| Q |
350 |
ctttcaaatcaacagcatgagcaatagtagaaattggagcattgttgttagtggcagcaaccatcaattgtttagagagagggtcatagattatacttac |
449 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| || ||||||||| |||||||||||| ||||| ||||| |||| |||||| ||||||||||| |
|
|
| T |
21483115 |
ctttcaaatcaacagcatgagcaacagttgaaatttgaccattgttgtcagtggcagcaacactcaatgtgttagatagagagtcataaattatacttac |
21483016 |
T |
|
| Q |
450 |
tttgactaatgacccacttaccttattccatggtgttgtcctgcgggaaattaaagagttaacattaattccaatatgtggatacttgggatcatactga |
549 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21483015 |
tttgactaatgacccactcaccctgttccatggtgttgtcctggaggaaattacagagttaacatcaattccaatatgtggatacttgggatcatactga |
21482916 |
T |
|
| Q |
550 |
ttggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcccatcaactactccgagatttg |
622 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21482915 |
ttggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcgcatcaactactccgagatttg |
21482843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 154 - 622
Target Start/End: Complemental strand, 21489662 - 21489182
Alignment:
| Q |
154 |
tcacaatctagtatggacttttgtttggccataatagttattat----cacaatttccatgcatgcat----agataacgtatacgtagaagaccaatca |
245 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||| |||||| ||||||||||||| | |||||||| ||||| |||||||||| |
|
|
| T |
21489662 |
tcacaatctaatatggacttttgtttagccatactagttattatatatcacaatctccatgcatgcatgcatacataacgta--cgtaggagaccaatca |
21489565 |
T |
|
| Q |
246 |
tgccaaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcagataaaccaaccttaacattttctgggaga |
345 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||| |||||||||| || ||||| || | |||| ||||||||| |||| || ||||||| |
|
|
| T |
21489564 |
tgccaaggttgaagtgaaagaccatgaatgaatctgttgcaattggcggccgacagctgtaactgttccagaaaaaccaaccctaacgttcggtgggaga |
21489465 |
T |
|
| Q |
346 |
acagctttcaaatcaacagcatgagcaatagtagaaattggagcattgttgttagtggcagcaaccatcaattgtttagagagagggtcatagattatac |
445 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||| || ||||| ||||||||||| |||| ||||| |||||| ||| |||||||||||||| |
|
|
| T |
21489464 |
acagctttcaaatcaacaacatcagcaagagtagaaatttgaccattgctgttagtggcaacaacactcaatgtgttagagggagagtcatagattatac |
21489365 |
T |
|
| Q |
446 |
ttactttgactaatgacccacttaccttattccatggtgttgtcctgcgggaaattaaagagttaacattaattccaatatgtggatacttgggatca-- |
543 |
Q |
| |
|
||||||| || ||||||||||| ||| | |||||||||||||| ||| || |||| |||||||||| |||||||||||||| ||| ||||||||| |
|
|
| T |
21489364 |
ttactttcaccaatgacccactcaccctgttccatggtgttgtactggatgatattactgagttaacatcaattccaatatgtgcataattgggatcaaa |
21489265 |
T |
|
| Q |
544 |
----tactgattggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcccatcaactactccgagatttg |
622 |
Q |
| |
|
||| |||||||| | |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
21489264 |
cactaacttattggcatgactatcaaactcgacaccaacaaattgattgaaagcatttttcccatcaactactccgagttttg |
21489182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 21483509 - 21483432
Alignment:
| Q |
126 |
tttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttggccataatagttattatcacaat |
203 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483509 |
tttagacatactagttatcatcacaaattcacaatctagtatggacttttgtttagccatactagttattatcacaat |
21483432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 21483640 - 21483520
Alignment:
| Q |
22 |
attcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatggtct |
121 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| || | || |||||||||||| |
|
|
| T |
21483640 |
attcatgacttggttatttaggtaacatta------ggttaagcatggactttatttatagaaaaaccgaaacatatacatgatt---caagtatggtct |
21483550 |
T |
|
| Q |
122 |
tttctttagccatactagttatcatcacaa |
151 |
Q |
| |
|
||| |||||||||||||||||| ||||||| |
|
|
| T |
21483549 |
tttgtttagccatactagttattatcacaa |
21483520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 21489897 - 21489775
Alignment:
| Q |
19 |
gagattcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatgg |
118 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| | ||||||||||| |||||||||||||||| ||||||||| || | |||||||||||| |
|
|
| T |
21489897 |
gagattcatgacttagctatttaggtaacatta------gtttaagcatgga-tttatttatagataaattgaaacatatac---atggttcaagtatgg |
21489808 |
T |
|
| Q |
119 |
tcttttctttagccatactagttatcatcacaa |
151 |
Q |
| |
|
||||| ||||||||||| |||||| ||||||| |
|
|
| T |
21489807 |
tctttggtttagccataccagttattatcacaa |
21489775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 21483472 - 21483389
Alignment:
| Q |
112 |
agtatggtcttttctttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttggccataatagttattatcacaat |
203 |
Q |
| |
|
||||||| ||||| |||||||||||||||||| ||||||| |||| ||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483472 |
agtatggacttttgtttagccatactagttattatcacaa--------tctaatatggacttttgtttagccatactagttattatcacaat |
21483389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 21483352 - 21483303
Alignment:
| Q |
154 |
tcacaatctagtatggacttttgtttggccataatagttattatcacaat |
203 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483352 |
tcacaatctaatatggacttttgtttagccatactagttattatcacaat |
21483303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 21483395 - 21483346
Alignment:
| Q |
154 |
tcacaatctagtatggacttttgtttggccataatagttattatcacaat |
203 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483395 |
tcacaatctaatatggacttttgtttagccatactagttattatcacaat |
21483346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 21489705 - 21489656
Alignment:
| Q |
154 |
tcacaatctagtatggacttttgtttggccataatagttattatcacaat |
203 |
Q |
| |
|
|||||||||||||||| || |||||| | |||| |||||||||||||||| |
|
|
| T |
21489705 |
tcacaatctagtatggtctattgtttaggcatactagttattatcacaat |
21489656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 21483559 - 21483519
Alignment:
| Q |
163 |
agtatggacttttgtttggccataatagttattatcacaat |
203 |
Q |
| |
|
||||||| ||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483559 |
agtatggtcttttgtttagccatactagttattatcacaat |
21483519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 501 - 596
Target Start/End: Original strand, 41047257 - 41047352
Alignment:
| Q |
501 |
taaagagttaacattaattccaatatgtggatacttgggatcatactgattggcataagagtcaaactctacaccaacaaattgattgaaagcatt |
596 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||| |||||| | ||||||||||| ||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
41047257 |
taaagagttgacatcaattccaatatgttgatatgggggatcccatgtattggcataagtgtcaaactctacaccaacaaatttattaaaagcatt |
41047352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 561 - 598
Target Start/End: Complemental strand, 41043911 - 41043874
Alignment:
| Q |
561 |
gtcaaactctacaccaacaaattgattgaaagcatttt |
598 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41043911 |
gtcaaactctacaccaacaaattgattgtaagcatttt |
41043874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 561 - 596
Target Start/End: Complemental strand, 41037869 - 41037834
Alignment:
| Q |
561 |
gtcaaactctacaccaacaaattgattgaaagcatt |
596 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41037869 |
gtcaaactctacaccaacaaattgattgtaagcatt |
41037834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 619
Target Start/End: Complemental strand, 41066124 - 41066001
Alignment:
| Q |
496 |
gaaattaaagagttaacattaattccaatatgtggatacttgggatcatactgattggcataagagtcaaactctacaccaacaaattgattgaaagcat |
595 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| ||||||||| | ||||| |||| |||||||||||||||||||||||||||| ||| || |
|
|
| T |
41066124 |
gaaattaaagagttgacatcgattccaatatgtttcgtattgggatcaaaactattgggataaaggtcaaactctacaccaacaaattgattgtaagtat |
41066025 |
T |
|
| Q |
596 |
tttgcccatcaactactccgagat |
619 |
Q |
| |
|
||| |||||||||||| |||| |
|
|
| T |
41066024 |
tttttgaatcaactactccaagat |
41066001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 562 - 596
Target Start/End: Complemental strand, 41074145 - 41074111
Alignment:
| Q |
562 |
tcaaactctacaccaacaaattgattgaaagcatt |
596 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41074145 |
tcaaactctacaccaacaaattgattgtaagcatt |
41074111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 562 - 598
Target Start/End: Complemental strand, 41089248 - 41089212
Alignment:
| Q |
562 |
tcaaactctacaccaacaaattgattgaaagcatttt |
598 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
41089248 |
tcaaactctacaccaataaattgattgaatgcatttt |
41089212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0684 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0684
Description:
Target: scaffold0684; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 594
Target Start/End: Complemental strand, 3294 - 3196
Alignment:
| Q |
496 |
gaaattaaagagttaacattaattccaatatgtggatacttgggatcatactgattggcataagagtcaaactctacaccaacaaattgattgaaagca |
594 |
Q |
| |
|
||||| |||||||| |||| |||||||||||| | ||| | ||||| | | |||| ||||| |||||| ||||||||||||||| ||||||||||| |
|
|
| T |
3294 |
gaaatcaaagagttgacatcaattccaatatgagcataatcaggatcccattcattgacataattgtcaaattctacaccaacaaatcgattgaaagca |
3196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 594
Target Start/End: Original strand, 4824 - 4922
Alignment:
| Q |
496 |
gaaattaaagagttaacattaattccaatatgtggatacttgggatcatactgattggcataagagtcaaactctacaccaacaaattgattgaaagca |
594 |
Q |
| |
|
||||| |||||||| |||| |||||||||||| | ||| | ||||| | | |||| ||||| |||||| ||||||||||||||| ||||||||||| |
|
|
| T |
4824 |
gaaatcaaagagttgacatcaattccaatatgagcataatcaggatcccattcattgacataattgtcaaattctacaccaacaaatcgattgaaagca |
4922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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