View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20553_low_10 (Length: 463)
Name: NF20553_low_10
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_low_10 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Complemental strand, 25886470 - 25886037
Alignment:
| Q |
19 |
agagcaaacactacctcctcaatcacaaagccacttctgaaagagaaagattctgactatagagtcactctttggttcaagctacccttgttggtaacta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
25886470 |
agagcaaacactacctcctcaatcacaaagccacttctgaaagagaaagattctgactatagagtcactctttggttcaagctaaccttgttggtaacta |
25886371 |
T |
|
| Q |
119 |
cccttttggctataacttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttcggttgtt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25886370 |
cccttttggctataacttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttcggttgtt |
25886271 |
T |
|
| Q |
219 |
tcaagcagtagtcaacattgtgattgtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctattggatagca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25886270 |
tcaagcagtagtcaacattgtgattgtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctattggatagca |
25886171 |
T |
|
| Q |
319 |
aactttgtgattgcttctttgtttgctatttcagctgttttccgaattgtaaatgccaatgaggagaaattggaacttagtttgagaatagatgacatat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
25886170 |
aactttgtgattgcttctttgtttgctatttcagctgttttccgaattgtaaatgccagtgaggagaagttggaacttagtttgagaatagatgacatat |
25886071 |
T |
|
| Q |
419 |
tctcattggttaatcttccattatctttgttctt |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
25886070 |
tctcattggttaatcttccattatctttgttctt |
25886037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 37 - 444
Target Start/End: Complemental strand, 44350296 - 44349889
Alignment:
| Q |
37 |
tcaatcacaaagccacttctgaaagagaaagattctgactatagagtcactctttggttcaagctacccttgttggtaactacccttttggctataactt |
136 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44350296 |
tcaatcacaaaaccacttctgaaagagaaagactctaactatagagtcactctttggttcaaactacccttgttggtaactaccattttggctataactt |
44350197 |
T |
|
| Q |
137 |
acactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttcggttgtttcaagcagtagtcaacat |
236 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
44350196 |
aaactgttctaggaatattggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttcggttgtttcaagctgtagtcaacat |
44350097 |
T |
|
| Q |
237 |
tgtgattgtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctattggatagcaaactttgtgattgcttct |
336 |
Q |
| |
|
|| || ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
44350096 |
agtaatagtgattctaatgttacacgaggaaaagttcaaatcttccaaacaccctttatccctaagaatctattggatagtaaactttgtgattgcttct |
44349997 |
T |
|
| Q |
337 |
ttgtttgctatttcagctgttttccgaattgtaaatgccaatgaggagaaattggaacttagtttgagaatagatgacatattctcattggttaatcttc |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
44349996 |
ttgtttgctatttcagctgttttccgaattgtaaataccagtgaggaaaaaatggaacttagtttgagaatagatgatatattctcattggttaatcttc |
44349897 |
T |
|
| Q |
437 |
cattatct |
444 |
Q |
| |
|
|||||||| |
|
|
| T |
44349896 |
cattatct |
44349889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 452
Target Start/End: Complemental strand, 14305397 - 14304964
Alignment:
| Q |
19 |
agagcaaacactacctcctcaatcacaaagccacttctgaaagagaaagattctgactatagagtcactctttggttcaagctacccttgttggtaacta |
118 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| | |||| ||| |||||| ||| |||| |||||||||| |
|
|
| T |
14305397 |
agagcaaacactagctcctcaatcacaaaaccacttctgcaagagaaagattctgactataaaatcacctttttgttcaaactagcctttttggtaacta |
14305298 |
T |
|
| Q |
119 |
cccttttggctataacttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttcggttgtt |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14305297 |
cccttttggctataagttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcactttttcggttgtt |
14305198 |
T |
|
| Q |
219 |
tcaagcagtagtcaacattgtgattgtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctattggatagca |
318 |
Q |
| |
|
||||||| || |||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14305197 |
tcaagcaataaccaacatagttatagtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctattggatagca |
14305098 |
T |
|
| Q |
319 |
aactttgtgattgcttctttgtttgctatttcagctgttttccgaattgtaaatgccaatgaggagaaattggaacttagtttgagaatagatgacatat |
418 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| ||| || | ||| | ||| || | ||| || || ||||| ||||||||||||||||||||||||| |
|
|
| T |
14305097 |
aactttgtgattgctactttgtttgctgtttcggctattgttcgattgataactgtccgtgaagaaaagttggagcttagtttgagaatagatgacatat |
14304998 |
T |
|
| Q |
419 |
tctcattggttaatcttccattatctttgttctt |
452 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
14304997 |
tctcattggttaatcttccattatctgtgttctt |
14304964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 452
Target Start/End: Complemental strand, 14321788 - 14321355
Alignment:
| Q |
19 |
agagcaaacactacctcctcaatcacaaagccacttctgaaagagaaagattctgactatagagtcactctttggttcaagctacccttgttggtaacta |
118 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||| | || |||||||||||||||||| |||| |||||||||| ||| |||| |||||||||| |
|
|
| T |
14321788 |
agagcaaacactagctcctcaatcacaaaaccacttctgcaggacaaagattctgactatagaatcaccttttggttcaaactagcctttttggtaacta |
14321689 |
T |
|
| Q |
119 |
cccttttggctataacttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttcggttgtt |
218 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14321688 |
cccttttggctataagttacactgttctaggaatcttggcttttactcaaaccaataaactttcttcatggaaacaaatagaagcactttttcggttgtt |
14321589 |
T |
|
| Q |
219 |
tcaagcagtagtcaacattgtgattgtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctattggatagca |
318 |
Q |
| |
|
||||||| || |||||| ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14321588 |
tcaagcaataaccaacatagtgatagtgatactaatggtacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctattggatagca |
14321489 |
T |
|
| Q |
319 |
aactttgtgattgcttctttgtttgctatttcagctgttttccgaattgtaaatgccaatgaggagaaattggaacttagtttgagaatagatgacatat |
418 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||| || | ||| | ||| || | ||| || || ||||| |||||||||| ||||||||| |||| |
|
|
| T |
14321488 |
aactttgtaattgcaactttgtttgctgcttcagctattgttcgattgataactgtcggtgaagaaaagttggagcttagtttgaaaatagatgatatat |
14321389 |
T |
|
| Q |
419 |
tctcattggttaatcttccattatctttgttctt |
452 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
14321388 |
tctcattggttaatcttccattatctgtgttctt |
14321355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 29 - 452
Target Start/End: Complemental strand, 14283629 - 14283206
Alignment:
| Q |
29 |
ctacctcctcaatcacaaagccacttctgaaagagaaagattctgactatagagtcactctttggttcaagctacccttgttggtaactacccttttggc |
128 |
Q |
| |
|
||||||||| ||||||||| ||||||||| || |||| ||||||||||||||| |||| |||||||||| ||| |||| ||| |||||||||||||||| |
|
|
| T |
14283629 |
ctacctccttaatcacaaaaccacttctgcaaaagaacgattctgactatagaatcaccttttggttcaaactagcctttttgttaactacccttttggc |
14283530 |
T |
|
| Q |
129 |
tataacttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttcggttgtttcaagcagta |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
14283529 |
tataagttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcactttttcggttgtttcaagcaata |
14283430 |
T |
|
| Q |
229 |
gtcaacattgtgattgtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctattggatagcaaactttgtga |
328 |
Q |
| |
|
|||||| || || |||||||||||| ||||||||| |||||| ||| |||||| |||||||||| |||| ||||| |||||| |||||||||||||| |
|
|
| T |
14283429 |
accaacatagtcatagtgattctaatggtacatgagataaagttgaaagcttccacacaccctttaccacttagaatttattgggcagcaaactttgtga |
14283330 |
T |
|
| Q |
329 |
ttgcttctttgtttgctatttcagctgttttccgaattgtaaatgccaatgaggagaaattggaacttagtttgagaatagatgacatattctcattggt |
428 |
Q |
| |
|
||||||||||||| || ||||||| || | ||||| ||| | ||| || ||||| |||| |||||||||||||||||||||||| ||||| |
|
|
| T |
14283329 |
ttgcttctttgttcactgcttcagctattgttcgaatgataaccgttggtgaaacaaagttggagcttaatttgagaatagatgacatattctctttggt |
14283230 |
T |
|
| Q |
429 |
taatcttccattatctttgttctt |
452 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
14283229 |
taatcttccattatctgtgttctt |
14283206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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