View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20553_low_12 (Length: 460)

Name: NF20553_low_12
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20553_low_12
NF20553_low_12
[»] chr7 (2 HSPs)
chr7 (1-447)||(27365429-27365874)
chr7 (144-191)||(40561732-40561779)
[»] chr2 (4 HSPs)
chr2 (144-194)||(11504036-11504086)
chr2 (295-368)||(7629753-7629826)
chr2 (144-192)||(4908853-4908901)
chr2 (144-192)||(15220835-15220883)
[»] chr5 (4 HSPs)
chr5 (147-192)||(4306575-4306620)
chr5 (298-366)||(15368136-15368204)
chr5 (143-189)||(15368539-15368585)
chr5 (276-365)||(10161720-10161809)
[»] chr4 (4 HSPs)
chr4 (144-192)||(41751246-41751294)
chr4 (146-192)||(55927746-55927792)
chr4 (295-368)||(31013854-31013927)
chr4 (152-184)||(37228990-37229022)
[»] chr3 (3 HSPs)
chr3 (144-190)||(37335008-37335054)
chr3 (149-191)||(43661903-43661945)
chr3 (144-192)||(35264385-35264433)
[»] chr8 (2 HSPs)
chr8 (147-192)||(16972041-16972086)
chr8 (144-180)||(7244554-7244590)
[»] chr6 (2 HSPs)
chr6 (147-180)||(3798975-3799008)
chr6 (295-372)||(10400817-10400894)
[»] chr1 (1 HSPs)
chr1 (147-192)||(48548991-48549036)


Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 27365429 - 27365874
Alignment:
Q  1 ttggaatgttcatcctccttttccttgtgttataattattgtgatgacttgactatggtccattacaaattaaggagggaaagcaagcacattaaaataa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27365429 ttggaatgttcatcctccttttccttgtgttataattattgtgatgacttgaatatggtccattacaaattaaggagggaaagcaagcacattaaaataa 27365528  T
Q  101 gcttaatgaatgtttggttctcatgtaacaagaattgatttagaagtgatttatgttttaatacattcatgtaaaaatgaattgaacaataactctaatg 200  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27365529 gcttaatgaatgtttggttctcatgtaacaagagttgattttgaagtgatttatgttttaatacattcgtgtaaaaatgaattgaacaataactctaatg 27365628  T
Q  201 ttaaaagttagctttagagaaaggnnnnnnnttcaatttctagcttcatactaaaataaattcaaaaggc-aaattaattctattggagaattttcaaac 299  Q
     |||||||||||| ||||||||         ||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  27365629 ctaaaagttagctgtagagaaa----aaaaattcaatttctaacttcatactaaaataaattcaaaaagcaaaattaattctattggagaattttcaaac 27365724  T
Q  300 atgtcaaaatcaaatctacatatctaaaatcaatcttgcatccataaaaagtagaaccaaacatacacttaattatttgatttcattcttgcatagaata 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27365725 atgtcaaaatcaaatctacatatctaaaatcaatcttgcatccataaaaagtagaaccaaacatacatttaattatttgatttcattcttgcatagaata 27365824  T
Q  400 ggtgcatg--nnnnnnnattagtctcccccagtgccgaagctagaataat 447  Q
    ||||||||         |||||||||||||||||||||||||||| ||||    
T  27365825 ggtgcatgtttttttttattagtctcccccagtgccgaagctagagtaat 27365874  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 40561732 - 40561779
Alignment:
Q  144 aagtgatttatgttttaatacattcatgtaaaaatgaattgaacaata 191  Q
    |||||||||||||||  |||||||||||||||| ||| ||||||||||    
T  40561732 aagtgatttatgtttggatacattcatgtaaaagtgagttgaacaata 40561779  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 11504036 - 11504086
Alignment:
Q  144 aagtgatttatgttttaatacattcatgtaaaaatgaattgaacaataact 194  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||| ||||||    
T  11504036 aagtgatttgtgttttaatacattcatgtaaaagtgagttgaactataact 11504086  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 7629826 - 7629753
Alignment:
Q  295 caaacatgtcaaaatcaaatctacatatctaaaatcaatcttgcatccataaaaagtagaaccaaacatacact 368  Q
    |||||||| ||||||||| ||||||  |||| |||||||||||  |||   |||||| ||||||||||||||||    
T  7629826 caaacatgacaaaatcaattctacacctctagaatcaatcttggctcctccaaaagtggaaccaaacatacact 7629753  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 4908901 - 4908853
Alignment:
Q  144 aagtgatttatgttttaatacattcatgtaaaaatgaattgaacaataa 192  Q
    |||||||||||||||  |||||||||||| ||| || ||||||||||||    
T  4908901 aagtgatttatgtttggatacattcatgttaaagtggattgaacaataa 4908853  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 15220835 - 15220883
Alignment:
Q  144 aagtgatttatgttttaatacattcatgtaaaaatgaattgaacaataa 192  Q
    |||||||||||||||  |||||||||||| ||| ||| |||||||||||    
T  15220835 aagtgatttatgtttggatacattcatgttaaagtgagttgaacaataa 15220883  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 4306620 - 4306575
Alignment:
Q  147 tgatttatgttttaatacattcatgtaaaaatgaattgaacaataa 192  Q
    ||||||||||||  ||||||||||||||||| ||||||||||||||    
T  4306620 tgatttatgtttggatacattcatgtaaaaaagaattgaacaataa 4306575  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 366
Target Start/End: Complemental strand, 15368204 - 15368136
Alignment:
Q  298 acatgtcaaaatcaaatctacatatctaaaatcaatcttgcatccataaaaagtagaaccaaacataca 366  Q
    ||||||||||||||| |||||||||||| ||||||| |||  |||   |||||| ||||||||||||||    
T  15368204 acatgtcaaaatcaattctacatatctagaatcaattttggctcctccaaaagtggaaccaaacataca 15368136  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 15368585 - 15368539
Alignment:
Q  143 gaagtgatttatgttttaatacattcatgtaaaaatgaattgaacaa 189  Q
    |||||||||||||||| ||||||| ||||||||| ||| ||||||||    
T  15368585 gaagtgatttatgtttgaatacatccatgtaaaagtgacttgaacaa 15368539  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 365
Target Start/End: Complemental strand, 10161809 - 10161720
Alignment:
Q  276 aattctattggagaattttcaaacatgtcaaaatcaaatctacatatctaaaatcaatcttgcatccataaaaagtagaaccaaacatac 365  Q
    ||||||||| |||||   ||||||||||||| ||||| |||||| ||||| ||||||| || | |||  | ||||| |||||||||||||    
T  10161809 aattctattcgagaacaatcaaacatgtcaagatcaattctacacatctagaatcaattttacttccccagaaagtggaaccaaacatac 10161720  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 41751246 - 41751294
Alignment:
Q  144 aagtgatttatgttttaatacattcatgtaaaaatgaattgaacaataa 192  Q
    |||||||| |||||| ||||||||||||||||| |||||| ||||||||    
T  41751246 aagtgattaatgtttgaatacattcatgtaaaactgaattaaacaataa 41751294  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 55927746 - 55927792
Alignment:
Q  146 gtgatttatgttttaatacattcatgtaaaaatgaattgaacaataa 192  Q
    |||||||||||||  |||||||||||||||| ||| |||||||||||    
T  55927746 gtgatttatgtttggatacattcatgtaaaagtgacttgaacaataa 55927792  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 31013854 - 31013927
Alignment:
Q  295 caaacatgtcaaaatcaaatctacatatctaaaatcaatcttgcatccataaaaagtagaaccaaacatacact 368  Q
    |||||||||||||||||| | |||| |||||||||||||  ||  ||| |  ||| ||||||||||||||||||    
T  31013854 caaacatgtcaaaatcaattttacacatctaaaatcaattatggttcctttgaaaatagaaccaaacatacact 31013927  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 37228990 - 37229022
Alignment:
Q  152 tatgttttaatacattcatgtaaaaatgaattg 184  Q
    |||||||||||| ||||||||||||||||||||    
T  37228990 tatgttttaatatattcatgtaaaaatgaattg 37229022  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 37335008 - 37335054
Alignment:
Q  144 aagtgatttatgttttaatacattcatgtaaaaatgaattgaacaat 190  Q
    ||||||||||||| | ||||||||||| ||||||||| |||||||||    
T  37335008 aagtgatttatgtctgaatacattcatataaaaatgagttgaacaat 37335054  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 43661945 - 43661903
Alignment:
Q  149 atttatgttttaatacattcatgtaaaaatgaattgaacaata 191  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||    
T  43661945 atttatgtttttatacattcatgtaaaagtgagttgaacaata 43661903  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 35264385 - 35264433
Alignment:
Q  144 aagtgatttatgttttaatacattcatgtaaaaatgaattgaacaataa 192  Q
    |||||| ||||||||   ||||||||||||||||||| |||||||||||    
T  35264385 aagtgagttatgtttgggtacattcatgtaaaaatgacttgaacaataa 35264433  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 16972041 - 16972086
Alignment:
Q  147 tgatttatgttttaatacattcatgtaaaaatgaattgaacaataa 192  Q
    |||||| ||||| ||||||||||||||||| ||| |||||||||||    
T  16972041 tgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataa 16972086  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 7244554 - 7244590
Alignment:
Q  144 aagtgatttatgttttaatacattcatgtaaaaatga 180  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  7244554 aagtgatttgtgtttgaatacattcatgtaaaaatga 7244590  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 3799008 - 3798975
Alignment:
Q  147 tgatttatgttttaatacattcatgtaaaaatga 180  Q
    ||||||||||||| ||||||||||||||||||||    
T  3799008 tgatttatgtttttatacattcatgtaaaaatga 3798975  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 372
Target Start/End: Original strand, 10400817 - 10400894
Alignment:
Q  295 caaacatgtcaaaatcaaatctacatatctaaaatcaatcttgcatccataaaaagtagaaccaaacatacacttaat 372  Q
    ||||||| |||||||||| | ||||  |||| ||||||| ||||||||   || ||| ||||||||||||||||||||    
T  10400817 caaacatatcaaaatcaattatacacctctagaatcaattttgcatcctccaagagtggaaccaaacatacacttaat 10400894  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 48548991 - 48549036
Alignment:
Q  147 tgatttatgttttaatacattcatgtaaaaatgaattgaacaataa 192  Q
    ||||||||||||| ||||||| |||||||| ||| |||||||||||    
T  48548991 tgatttatgttttgatacatttatgtaaaagtgagttgaacaataa 48549036  T

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