View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20553_low_13 (Length: 460)
Name: NF20553_low_13
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_low_13 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 4 - 460
Target Start/End: Original strand, 5744832 - 5745285
Alignment:
| Q |
4 |
ttcttcttttgatgatgatgaccagctgaatatcttggattgccatattctcctccttatttgagttttggaggtctagggtcattatctggagtcaact |
103 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5744832 |
ttcttcttttgatgatgatgactagctgaatatcttggattgccatattctcctccttatttgagttttggaggtctcgggtcattatctggagtcaact |
5744931 |
T |
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| Q |
104 |
atgcatctggatcatgtggaattctgccagagagtggacatgttcttgtaagatttttcgttctcctattcttgtaatgctagaaacatatataatgatt |
203 |
Q |
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| T |
5744932 |
atgcatctggatcatgtggaattctgccagagagtggacatgttcttgtaagatttttcgttttcctatt---gtaatgctagaaacatatataatgatt |
5745028 |
T |
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| Q |
204 |
ttctttctttgtttcgatttccctacttcatatcttgtttttgtttgttatacaaacaatggcgttgatgcatattttatacgttcactagatatcaaaa |
303 |
Q |
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| T |
5745029 |
ttctttctttgtttcgatttccctacttcatatcttgtttttgtttgttatacaaacaatggcgttgagccatattttatatgttcactagatatcaaaa |
5745128 |
T |
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| Q |
304 |
tgaaaaatacaaccataaaagaaaatttatacttgtgaacaccatctaccttgtaacgggtgtgcattagatttatatttgtgaacaccatctagtcgtc |
403 |
Q |
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| T |
5745129 |
tgaaaaatacaaccataaaagaaaatttatacttgtgaacaccatctaccttgtaacgggtgtacattagatttatatttgtgaacaccatctagtcgtc |
5745228 |
T |
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| Q |
404 |
gggacttacacgagatttgatcttcgtctcttgaaattatgaagtcaggctcttaca |
460 |
Q |
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| T |
5745229 |
gggtcttacacgagatttgaacttcgtctcttgaaattatgaagtcaagctcttaca |
5745285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 224 - 460
Target Start/End: Complemental strand, 22819 - 22583
Alignment:
| Q |
224 |
ccctacttcatatcttgtttttgtttgttatacaaacaatggcgttgatgcatattttatacgttcactagatatcaaaatgaaaaatacaaccataaaa |
323 |
Q |
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| T |
22819 |
ccctacttcatatcttgtttttgtttgttatacaaacaatggcgttgagccatattttatatgttcactagatatcaaaatgaaaaatacaaccataaaa |
22720 |
T |
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| Q |
324 |
gaaaatttatacttgtgaacaccatctaccttgtaacgggtgtgcattagatttatatttgtgaacaccatctagtcgtcgggacttacacgagatttga |
423 |
Q |
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| T |
22719 |
gaaaatttatacttgtgaacatcatctaccttgtaacgggtgtacattagatttatatttgtgaacaccatctagtcgtcgggtcttacacgagatttga |
22620 |
T |
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| Q |
424 |
tcttcgtctcttgaaattatgaagtcaggctcttaca |
460 |
Q |
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| T |
22619 |
acttcgtctcttgaaattatgaagtcaagctcttaca |
22583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 161
Target Start/End: Original strand, 14511728 - 14511851
Alignment:
| Q |
38 |
ttggattgccatattctcctccttatttgagttttggaggtctagggtcattatctggagtcaactatgcatctggatcatgtggaattctgccagagag |
137 |
Q |
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| T |
14511728 |
ttggattgccatattctccttcatatgtgacatgtagaggtctagggtaattaactggtgttaactatgcatatgggtcatgtggaattttgacataaag |
14511827 |
T |
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| Q |
138 |
tggacatgttcttgtaagattttt |
161 |
Q |
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| T |
14511828 |
tgcacatatgcttgtaagactttt |
14511851 |
T |
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