View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20553_low_16 (Length: 450)
Name: NF20553_low_16
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 294
Target Start/End: Complemental strand, 42685781 - 42685501
Alignment:
| Q |
14 |
agaggaaaatgccgaagagaataacatgtttttcgtacgaagcatcgcatgctgttttgacttcttctgttctccatgcttctaaacccaaattcaatac |
113 |
Q |
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| T |
42685781 |
agaggaaaatgccgaagagaataacatgtttttcatacgaagcatcgcatgctgttttgacttcttctgttctccatgcttctaaacccaaattcaatac |
42685682 |
T |
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| Q |
114 |
tggaatggaaaccattagagctaataagctaaggactccggtcaagatattgttgaattcactatcttcgtattgnnnnnnnngtttataatctatttcc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42685681 |
tggaatggaaaccattagagctaataagctaaggactccggtcaagatattgttgaattcactatcttcgtattgttttttttgtttataatctatttcc |
42685582 |
T |
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| Q |
214 |
ttgataccattgttgggtagtttgaatgctggtgaaatgtaacttaggagacgaaagattgatgtcaagaaagaagaaaac |
294 |
Q |
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| T |
42685581 |
ttgataccattgttggctagtttgaatgctggtgaaatgtaacttaggagacgaaagattgatgtcaagaaagaagaaaac |
42685501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 335 - 434
Target Start/End: Complemental strand, 42685460 - 42685361
Alignment:
| Q |
335 |
aggataggtaattccaattttgaaagaaagcacctatgataccaattggtatatgttaagattgaaggaaaaatgcaattatagaacatgagatcacgag |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42685460 |
aggataggtaattccaattttgaaagaaagcacctatgataccaattggtatatgttaagattgaaggaaaaatgcaattatagaacatgagatcacgag |
42685361 |
T |
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