View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20553_low_17 (Length: 441)

Name: NF20553_low_17
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20553_low_17
NF20553_low_17
[»] chr6 (2 HSPs)
chr6 (207-417)||(16973018-16973228)
chr6 (10-141)||(16973296-16973426)
[»] chr5 (7 HSPs)
chr5 (15-97)||(35343393-35343475)
chr5 (27-141)||(5249781-5249894)
chr5 (230-294)||(5813114-5813178)
chr5 (47-97)||(5812930-5812980)
chr5 (230-294)||(33642704-33642768)
chr5 (47-97)||(15388831-15388881)
chr5 (230-294)||(13611223-13611287)
[»] chr3 (2 HSPs)
chr3 (208-381)||(34739164-34739332)
chr3 (15-135)||(34738979-34739098)
[»] chr8 (1 HSPs)
chr8 (230-294)||(38069795-38069859)
[»] chr1 (2 HSPs)
chr1 (230-294)||(32905947-32906011)
chr1 (47-97)||(32905759-32905809)
[»] chr2 (1 HSPs)
chr2 (47-128)||(33470681-33470761)
[»] chr4 (1 HSPs)
chr4 (230-294)||(54132370-54132434)


Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 207 - 417
Target Start/End: Complemental strand, 16973228 - 16973018
Alignment:
Q  207 cttacattgaatattaaactaagctttcatattcttttaagatattattggagtattaactataaagggagaactcacaaaatacaaaggcaatctccga 306  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16973228 cttacattgaatattaacctaagctttcatattcttttaagatattattggagtattaactacaaagggagaactcacaaaatacaaaggcaatctccga 16973129  T
Q  307 tcaaccaattatgtgcctctaaagttagacgagtttggataaatattattctcatgtttttgttctacattaatagatctttgtgattgataatttaatt 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  16973128 tcaaccaattatgtgcctctaaagttagacgagtttggataaatattattctcatgtttttgttctacattaatagatttttatgatttataatttaatt 16973029  T
Q  407 tatttgtaggg 417  Q
    |||||||||||    
T  16973028 tatttgtaggg 16973018  T

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Target: chr6; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 16973426 - 16973296
Alignment:
Q  10 aagaatattttttaagaatatgaccaccgtgaaatcaattgatgattcaattgtttctttttatgcattcaaattcacatcatatgatnnnnnnntttaa 109  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||       |||||    
T  16973426 aagaatattttttaagaatatgaccaccgtgaaatcaatcgatgattcaattatttctttttatgcattcaaattcacatcacatgat-aaaaaatttaa 16973328  T
Q  110 agctaagaatgaagattcatacttaattgata 141  Q
    || |||||||||| ||||||||||||||||||    
T  16973327 agttaagaatgaatattcatacttaattgata 16973296  T

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Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 35343475 - 35343393
Alignment:
Q  15 tattttttaagaatatgaccaccgtgaaatcaattgatgattcaattgtttctttttatgcattcaaattcacatcatatgat 97  Q
    |||| |||||||||||||||||| || | || |||||||||||||||||| |||||| |||||||||||||||||| ||||||    
T  35343475 tattctttaagaatatgaccaccatggagtcgattgatgattcaattgttcctttttgtgcattcaaattcacatcttatgat 35343393  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 5249781 - 5249894
Alignment:
Q  27 atatgaccaccgtgaaatcaattgatgattcaattgtttctttttatgcattcaaattcacatcatatgatnnnnnnntttaaagctaagaatgaagatt 126  Q
    |||||||||||||| || | |||||||| ||||||||| |||||||||||||||| || ||||||||||||       ||||||| ||||||||||||||    
T  5249781 atatgaccaccgtggaaccgattgatgactcaattgttcctttttatgcattcaactttacatcatatgat-gaaatttttaaagttaagaatgaagatt 5249879  T
Q  127 catacttaattgata 141  Q
    || || |||||||||    
T  5249880 cacacctaattgata 5249894  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 5813114 - 5813178
Alignment:
Q  230 ctttcatattcttttaagatattattggagtattaactataaagggagaactcacaaaatacaaa 294  Q
    |||||| ||| || ||||||||||||||||||||| ||  |||||||||||||||| ||||||||    
T  5813114 ctttcacatttttgtaagatattattggagtattacctgcaaagggagaactcacagaatacaaa 5813178  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 5812930 - 5812980
Alignment:
Q  47 attgatgattcaattgtttctttttatgcattcaaattcacatcatatgat 97  Q
    |||||||| ||||||||| |||||||||||||||| || ||||||||||||    
T  5812930 attgatgactcaattgttcctttttatgcattcaagtttacatcatatgat 5812980  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 33642768 - 33642704
Alignment:
Q  230 ctttcatattcttttaagatattattggagtattaactataaagggagaactcacaaaatacaaa 294  Q
    |||||||||| ||||||||||||| | |||||||| |   |||||| ||||||||||||||||||    
T  33642768 ctttcatatttttttaagatattactagagtattagccgcaaagggtgaactcacaaaatacaaa 33642704  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 15388831 - 15388881
Alignment:
Q  47 attgatgattcaattgtttctttttatgcattcaaattcacatcatatgat 97  Q
    |||||||| ||| ||||| ||||||||| |||||| |||||||||||||||    
T  15388831 attgatgactcagttgttcctttttatgtattcaagttcacatcatatgat 15388881  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 13611287 - 13611223
Alignment:
Q  230 ctttcatattcttttaagatattattggagtattaactataaagggagaactcacaaaatacaaa 294  Q
    |||||||||| | ||| ||||||| |||||||||| |   |||||| ||||||||||||||||||    
T  13611287 ctttcatattttcttaggatattactggagtattagccgcaaagggtgaactcacaaaatacaaa 13611223  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 381
Target Start/End: Original strand, 34739164 - 34739332
Alignment:
Q  208 ttacattgaatattaaactaagctttcatattcttttaagatattattggagtattaactataaagggagaactcacaaaatacaaaggcaatctccgat 307  Q
    |||||||| | ||||| |||| |||||||||| ||  ||||||| ||||||||| || ||| ||||||||||| || | |||||||| ||| || ||       
T  34739164 ttacattggagattaacctaacctttcatattattcgaagatatcattggagtaatacctacaaagggagaacacatagaatacaaatgcagtcacc--- 34739260  T
Q  308 caaccaattatgtgcctctaaagttagacgagtttggataaatattattctcatgtttttgttctacattaata 381  Q
      || |||||| ||||||| |||||||||||  |   |||||||||||| ||||||||||||||||||||||||    
T  34739261 --acaaattatatgcctctgaagttagacgacctcatataaatattattatcatgtttttgttctacattaata 34739332  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 34738979 - 34739098
Alignment:
Q  15 tattttttaagaatatgaccaccgtgaaatcaattgatgattcaattgtttctttttatgcattcaaattcacatcatatgatnnnnnnntttaaagcta 114  Q
    |||| ||||||||||| | |||| |||||||| |||||||||||||| ||  |||||||||||| || ||||| || ||||||       |||||||| |    
T  34738979 tattctttaagaatataatcaccatgaaatcagttgatgattcaattattcatttttatgcatttaagttcacttcgtatgat-aaaatttttaaagcca 34739077  T
Q  115 agaatgaagattcatacttaa 135  Q
    |||||||||||| ||||||||    
T  34739078 agaatgaagatttatacttaa 34739098  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 38069859 - 38069795
Alignment:
Q  230 ctttcatattcttttaagatattattggagtattaactataaagggagaactcacaaaatacaaa 294  Q
    |||||| ||| || ||||||||||||||||||||| ||| |||| ||||||||||| ||||||||    
T  38069859 ctttcacatttttgtaagatattattggagtattacctacaaagagagaactcacataatacaaa 38069795  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 32905947 - 32906011
Alignment:
Q  230 ctttcatattcttttaagatattattggagtattaactataaagggagaactcacaaaatacaaa 294  Q
    |||||| ||| || ||||||||||||||||||||| ||  |||||||||||||||| ||||||||    
T  32905947 ctttcacatttttgtaagatattattggagtattaccttcaaagggagaactcacataatacaaa 32906011  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 32905759 - 32905809
Alignment:
Q  47 attgatgattcaattgtttctttttatgcattcaaattcacatcatatgat 97  Q
    |||||||| ||| ||||| |||||||||||||||| |||| ||||||||||    
T  32905759 attgatgactcagttgttcctttttatgcattcaagttcatatcatatgat 32905809  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 33470761 - 33470681
Alignment:
Q  47 attgatgattcaattgtttctttttatgcattcaaattcacatcatatgatnnnnnnntttaaagctaagaatgaagattca 128  Q
    |||||||| ||| |||||  ||||||||||||||| |||||||||||||||       ||||||| ||||||||||||||||    
T  33470761 attgatgactcagttgttcttttttatgcattcaagttcacatcatatgat-gaaaattttaaagttaagaatgaagattca 33470681  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 54132434 - 54132370
Alignment:
Q  230 ctttcatattcttttaagatattattggagtattaactataaagggagaactcacaaaatacaaa 294  Q
    |||||||||| | ||| ||||||| |||||||||| |   |||||| ||||||||||||||||||    
T  54132434 ctttcatattttcttaggatattactggagtattagccgcaaagggtgaactcacaaaatacaaa 54132370  T

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