View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20553_low_18 (Length: 430)
Name: NF20553_low_18
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 11603773 - 11603357
Alignment:
| Q |
1 |
tattccaggttccattaagaggctgcaaaaccttgagacattggatcttaagcacacgtctgtaactgaactgcctgttgaaattgcggagctgaaacgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11603773 |
tattccaggttccattaagaggctgcaaaaccttgagacattggatcttaagcacacgtctgtaactgaactgcctgttgaaattgcggagctgaaacgg |
11603674 |
T |
|
| Q |
101 |
ttacgccatctcctcgtgtatcgttacgagattgaatcttatgctaaattccactcaaggcatggcttcaaggtggctgcacctataggaaacatgctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11603673 |
ttacgccatctcctcgtgtatcgttacgagattgaatcttatgctaaattccactcaaggcatggcttcaaggtggctgcacctataggaaacatgctat |
11603574 |
T |
|
| Q |
201 |
cattgcagaagctttgtttcatagaggtagatcaaggaagtgcagccttgatggttgagctaggaaaacttactcaacttaggaggctaggcataagaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11603573 |
cattgcagaagctttgtttcatagaggtagatcaaggaagtgcagccttgatggttgagctaggaaaacttactcaacttaggaggctaggcataagaaa |
11603474 |
T |
|
| Q |
301 |
aatgaggaaagaagatggtgctgctttgtgttcatccattgagaagatgatccatcttaggtcactctccatatttgctatagaagaagacgaggtaatc |
400 |
Q |
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| T |
11603473 |
aatgaggaaagaagatggtgctgctttgtgttcatccattgagaagatgatccatcttaggtcactctccatatttgctatagaagaagacgaggtaatc |
11603374 |
T |
|
| Q |
401 |
gatattcatgacatttc |
417 |
Q |
| |
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| T |
11603373 |
gatattcatgacatttc |
11603357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 2 - 417
Target Start/End: Original strand, 11623677 - 11624092
Alignment:
| Q |
2 |
attccaggttccattaagaggctgcaaaaccttgagacattggatcttaagcacacgtctgtaactgaactgcctgttgaaattgcggagctgaaacggt |
101 |
Q |
| |
|
||||||||||| ||||||| |||| || || | || |||||||||||||||||||| | ||| || ||| ||||||||||| |||||||||||||||||| |
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| T |
11623677 |
attccaggttcaattaagaagctgaaatacttggaaacattggatcttaagcacacttatgtcacggaattgcctgttgaagttgcggagctgaaacggt |
11623776 |
T |
|
| Q |
102 |
tacgccatctcctcgtgtatcgttacgagattgaatcttatgctaaattccactcaaggcatggcttcaaggtggctgcacctataggaaacatgctatc |
201 |
Q |
| |
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||||||||||||| |||||||| || || |||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11623777 |
tacgccatctcctggtgtatcgctatgaaattgaatcctatgctcatttccactcaaggcatggcttcaaggtggctgcacctataggaaacatgctatc |
11623876 |
T |
|
| Q |
202 |
attgcagaagctttgtttcatagaggtagatcaaggaagtgcagccttgatggttgagctaggaaaacttactcaacttaggaggctaggcataagaaaa |
301 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
11623877 |
attgcaaaagctttgtttcatagaggtagatcaaggaagcagagccttgatggtagagttaggaaaactcactcaacttaggaggctaggcataagaaaa |
11623976 |
T |
|
| Q |
302 |
atgaggaaagaagatggtgctgctttgtgttcatccattgagaagatgatccatcttaggtcactctccatatttgctatagaagaagacgaggtaatcg |
401 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| ||||| |||| ||| |||||||| |||||| |||||| |
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| T |
11623977 |
atgaggaaagaagacggtgctgctttgtgttcatctattgagaagatgatcaatcttagatcacttaacataactgcaatagaagatgacgagataatcg |
11624076 |
T |
|
| Q |
402 |
atattcatgacatttc |
417 |
Q |
| |
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||||||| ||||||| |
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|
| T |
11624077 |
atattcacaacatttc |
11624092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 2 - 417
Target Start/End: Original strand, 11642183 - 11642598
Alignment:
| Q |
2 |
attccaggttccattaagaggctgcaaaaccttgagacattggatcttaagcacacgtctgtaactgaactgcctgttgaaattgcggagctgaaacggt |
101 |
Q |
| |
|
|||||| |||| ||||||| ||| ||| || | || |||||||||||||| ||||| | ||| | ||| | ||| |||||||||||||||||||||||| |
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| T |
11642183 |
attccaagttcaattaagaagctccaatacttggaaacattggatcttaaacacacttgtgtcatggaattaccttttgaaattgcggagctgaaacggt |
11642282 |
T |
|
| Q |
102 |
tacgccatctcctcgtgtatcgttacgagattgaatcttatgctaaattccactcaaggcatggcttcaaggtggctgcacctataggaaacatgctatc |
201 |
Q |
| |
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||||||| ||||| |||||||| ||| ||||||| || |||||| | |||||||||| | |||||||||||||||||||||||||||||||||||| ||| |
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| T |
11642283 |
tacgccacctcctggtgtatcgctacaagattgagtcctatgctcatttccactcaaagaatggcttcaaggtggctgcacctataggaaacatgcaatc |
11642382 |
T |
|
| Q |
202 |
attgcagaagctttgtttcatagaggtagatcaaggaagtgcagccttgatggttgagctaggaaaacttactcaacttaggaggctaggcataagaaaa |
301 |
Q |
| |
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||||| |||||||||||| |||| |||||||||||||||| ||| |||||||| ||| |||||| ||| ||||||||||| | ||||||||| |||||| |
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| T |
11642383 |
tttgcaaaagctttgtttcgtagatgtagatcaaggaagtggagcattgatggtagagttaggaagactcactcaacttagaaagctaggcattagaaaa |
11642482 |
T |
|
| Q |
302 |
atgaggaaagaagatggtgctgctttgtgttcatccattgagaagatgatccatcttaggtcactctccatatttgctatagaagaagacgaggtaatcg |
401 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |||||| ||| || |||||||| |||||||||| |
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| T |
11642483 |
atgaggaaagaagatggtgctgctttgtgttcatctattgagaagatgatcaatcttagatcactttccataactgcaattgaagaagatgaggtaatcg |
11642582 |
T |
|
| Q |
402 |
atattcatgacatttc |
417 |
Q |
| |
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|||||||||||||||| |
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| T |
11642583 |
atattcatgacatttc |
11642598 |
T |
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