View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20553_low_20 (Length: 420)
Name: NF20553_low_20
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_low_20 |
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| [»] scaffold0062 (4 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 217 - 407
Target Start/End: Complemental strand, 48751 - 48561
Alignment:
| Q |
217 |
aaacttaacattgtgaaatatatatgaagcaaagtaagaaaataaacagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaa |
316 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48751 |
aaacttaaaattgtgaaatatatgtgaagcaaagtaagaaaataaacagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaa |
48652 |
T |
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| Q |
317 |
cacacttgtacatggtgaaagactatttaacttgtacacatgagatgagacaaattaaagacttttaagataggaaaaggatatatttgct |
407 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
48651 |
cacacttgtacatggtgaaagactatttaagttgtacacatgagatgagacaaattaaagtcttttaagataggaaaaggatataattgct |
48561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 217 - 407
Target Start/End: Complemental strand, 61290 - 61100
Alignment:
| Q |
217 |
aaacttaacattgtgaaatatatatgaagcaaagtaagaaaataaacagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaa |
316 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
61290 |
aaacttaaaattgtgaaatatatgtgaagcaaagtaagaaaataaacagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaa |
61191 |
T |
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| Q |
317 |
cacacttgtacatggtgaaagactatttaacttgtacacatgagatgagacaaattaaagacttttaagataggaaaaggatatatttgct |
407 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
61190 |
cacacttgtacatggtgaaagactatttaagttgtacacatgagatgagacaaattaaagtcttttaagataggaaaaggatataattgct |
61100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 240 - 407
Target Start/End: Complemental strand, 73386 - 73219
Alignment:
| Q |
240 |
atgaagcaaagtaagaaaataaacagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaacacacttgtacatggtgaaagac |
339 |
Q |
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| T |
73386 |
atgaagaaaagtaagaaaataaacagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaacacactcgtacatggtgaaagac |
73287 |
T |
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| Q |
340 |
tatttaacttgtacacatgagatgagacaaattaaagacttttaagataggaaaaggatatatttgct |
407 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
73286 |
tatttaagttgtacacatgagatgagacaaattaaagtcttttaagataggaaaaggatataattgct |
73219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 217 - 341
Target Start/End: Complemental strand, 64018 - 63894
Alignment:
| Q |
217 |
aaacttaacattgtgaaatatatatgaagcaaagtaagaaaataaacagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaa |
316 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
64018 |
aaacttaaaattgtgaaatatatgtgaagcaaagtaagaaaataaacagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaa |
63919 |
T |
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| Q |
317 |
cacacttgtacatggtgaaagacta |
341 |
Q |
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|||||| |||||||||||||||||| |
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| T |
63918 |
cacactcgtacatggtgaaagacta |
63894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 217 - 407
Target Start/End: Complemental strand, 18692100 - 18691910
Alignment:
| Q |
217 |
aaacttaacattgtgaaatatatatgaagcaaagtaagaaaataaacagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaa |
316 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18692100 |
aaacttaaaattgtgaaatatatgtgaagcaaagtaagaaaataaacagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaa |
18692001 |
T |
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| Q |
317 |
cacacttgtacatggtgaaagactatttaacttgtacacatgagatgagacaaattaaagacttttaagataggaaaaggatatatttgct |
407 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
18692000 |
cacacttgtacatggtgaaagactatttaagttgtacacatgagatgagacaaattaaagtcttttaagataggaaaaggatataattgct |
18691910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 217 - 407
Target Start/End: Complemental strand, 15699839 - 15699649
Alignment:
| Q |
217 |
aaacttaacattgtgaaatatatatgaagcaaagtaagaaaataaacagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaa |
316 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15699839 |
aaacttaaaattgtgaaatatatgtgaagcaaagtaagaaaataaacagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaa |
15699740 |
T |
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| Q |
317 |
cacacttgtacatggtgaaagactatttaacttgtacacatgagatgagacaaattaaagacttttaagataggaaaaggatatatttgct |
407 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
15699739 |
cacacttgtacatggtgaaagactatttaagttgtacacatgagatgagacaaattaaagtcttttaagataggaaaaggatataattgct |
15699649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 217 - 407
Target Start/End: Complemental strand, 15712378 - 15712188
Alignment:
| Q |
217 |
aaacttaacattgtgaaatatatatgaagcaaagtaagaaaataaacagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaa |
316 |
Q |
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|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15712378 |
aaacttaaaattgtgaaatatatgtgaagcaaagtaagaaaataaacagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaa |
15712279 |
T |
|
| Q |
317 |
cacacttgtacatggtgaaagactatttaacttgtacacatgagatgagacaaattaaagacttttaagataggaaaaggatatatttgct |
407 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
15712278 |
cacacttgtacatggtgaaagactatttaagttgtacacatgagatgagacaaattaaagtcttttaagataggaaaaggatataattgct |
15712188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 240 - 407
Target Start/End: Complemental strand, 15724833 - 15724666
Alignment:
| Q |
240 |
atgaagcaaagtaagaaaataaacagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaacacacttgtacatggtgaaagac |
339 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15724833 |
atgaagaaaagtaagaaaataaacagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaacacactcgtacatggtgaaagac |
15724734 |
T |
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| Q |
340 |
tatttaacttgtacacatgagatgagacaaattaaagacttttaagataggaaaaggatatatttgct |
407 |
Q |
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| T |
15724733 |
tatttaagttgtacacatgagatgagacaaattaaagtcttttaagataggaaaaggatataattgct |
15724666 |
T |
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