View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20553_low_21 (Length: 414)
Name: NF20553_low_21
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 16240377 - 16239982
Alignment:
| Q |
1 |
catttcccataaggatttttgtagactctttctgcggaagtacactttgcatcgcaacagtttgaatcacaattagcgtcgcaaagtccataccctagac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16240377 |
catttcccataaggatttttgtagactctttctgcggaagtacactttgcatcgcaacagtttgaatcacaattagcgtcgcaaagtccataccctagac |
16240278 |
T |
|
| Q |
101 |
tgcacatcggtattccttgaattttagggggtagtgacaaattgaaaaaacaagtgcataggttgtagtaacgacaatgtgaatcaccacttattgtaag |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16240277 |
tgcacattggtattccttgaattttagggggtagtgacaaattgaaaaaacaagtgcataggttgtagtaacgacaatgtgaatcaccacttattgtaag |
16240178 |
T |
|
| Q |
201 |
ctttctacaataacctttacaatccatcgtagaacaactacccacaatttttgcacatgtagctcccaccagtattgattgcactgtgctcccaatcaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16240177 |
ctttctacaataacctttacaatccatcgtagcacaactacccacaatttttgcacatgtagctcccaccagtattgattgcactgtactcccaatcaaa |
16240078 |
T |
|
| Q |
301 |
ttggggaagaaatattagtgagttttcgatccaacaaccacggatatgctaatcggatctagcaagaccaggattgcttgcagtcaaaagtttgcc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16240077 |
ttggggaagaaatattagtgagttttcgatccaacaaccacggatatgctaatcggatctagcaagaccaggattgcttgcagtcaaaagtttgcc |
16239982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 16264805 - 16264727
Alignment:
| Q |
216 |
tttacaatccatcgtagaacaactacccacaatttttgcacatgtagctcccaccagtattgattgcactgtgctccca |
294 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||| ||| ||||||||| | || ||||||||||||||| | |||||| |
|
|
| T |
16264805 |
tttacaatccatcacagaacagctaccaacaattcttgggcatgtagcttctactagtattgattgcactatactccca |
16264727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University