View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20553_low_28 (Length: 336)
Name: NF20553_low_28
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 6 - 318
Target Start/End: Original strand, 8066288 - 8066600
Alignment:
| Q |
6 |
gtcgaagaatatacattttaacgtaggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaaagaagttgagccctca |
105 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8066288 |
gtcgaacactatacattttaacgtaggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaaagaagttatgccctca |
8066387 |
T |
|
| Q |
106 |
aaaactgatttgcaatcactcattgcaaacctcatcatattagagtcactctccatagcatcattgaataactccgcgtaagccgaattttgttgcatga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8066388 |
aaaactgatttgcaatcactcattgcaaacctcatcatattagagtcactctccatagcatcattgaataactccgcgtaagccgaattttgttgcatga |
8066487 |
T |
|
| Q |
206 |
aatcccataatgtagtatcgaagattgtgagatcctccttagatgtccatttagtcaattgataatataattcaacaccggtagggtttgttaccatctt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8066488 |
aatcccataatgtagtatcgaagattgtgagatcctccttagatgtccatttggtcaattgataatataattcaacaccggtagggtttgttaccatctt |
8066587 |
T |
|
| Q |
306 |
aaccattgaagtt |
318 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8066588 |
aaccattgaagtt |
8066600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 6 - 316
Target Start/End: Original strand, 8074723 - 8075033
Alignment:
| Q |
6 |
gtcgaagaatatacattttaacgtaggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaaagaagttgagccctca |
105 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
8074723 |
gtcgaacactatacattttaacgtaggaaacgcctcacaaataattttaacagtgtttccggttccacctccaacatcaaccaacgaagttaagccctca |
8074822 |
T |
|
| Q |
106 |
aaaactgatttgcaatcactcattgcaaacctcatcatattagagtcactctccatagcatcattgaataactccgcgtaagccgaattttgttgcatga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| | | || || ||||||| || | |
|
|
| T |
8074823 |
aaaactgatttgcaatcactcattgcaaacctcaccatattagaatcactttccatagcatcattgaataacttggaatgagtcggattttgtaaaatta |
8074922 |
T |
|
| Q |
206 |
aatcccataatgtagtatcgaagattgtgagatcctccttagatgtccatttagtcaattgataatataattcaacaccggtagggtttgttaccatctt |
305 |
Q |
| |
|
|||||||||||| ||| || ||||||||||| |||||| | ||||||||| | ||||||| |||| | ||| || | || |||||||||| || ||| |
|
|
| T |
8074923 |
aatcccataatggagtctcaaagattgtgaggtcctccattgatgtccatgtgctcaattggtaatgtttttcgacgcgagttgggtttgttagcaactt |
8075022 |
T |
|
| Q |
306 |
aaccattgaag |
316 |
Q |
| |
|
||||||||||| |
|
|
| T |
8075023 |
aaccattgaag |
8075033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 34951317 - 34951375
Alignment:
| Q |
31 |
ggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaa |
89 |
Q |
| |
|
|||||||||||| ||||||| ||| | |||||||| |||||||| |||||||||||||| |
|
|
| T |
34951317 |
ggaaacgcctcacaaataatcttagctgtgtttccagttccaccaccaacatcaaccaa |
34951375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 34946846 - 34946904
Alignment:
| Q |
31 |
ggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaa |
89 |
Q |
| |
|
|||||||||||| | ||||| ||| | |||||||| |||||||| |||||||||||||| |
|
|
| T |
34946846 |
ggaaacgcctcacatataatcttagctgtgtttccagttccaccaccaacatcaaccaa |
34946904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University