View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20553_low_3 (Length: 537)
Name: NF20553_low_3
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 10 - 515
Target Start/End: Complemental strand, 32910243 - 32909741
Alignment:
| Q |
10 |
ataattctgaaattggtcacaggttaattaaccagcttaattatgtgtttgtcataattcacaacccactatgtataactggaaaaagtgaagatcaatt |
109 |
Q |
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| T |
32910243 |
ataattctgaaattggtcacaggttaattaaccagcttaatcatgtgtttgtcataattcacaacccactatgtataactggaaaaggtgaagatcaatt |
32910144 |
T |
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| Q |
110 |
aattatttaaaagacacgattaactggcgttttctttctcttaaattatgttatatgccgctgttaaaggtggactaattaatgacattgtggcatgggt |
209 |
Q |
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| T |
32910143 |
aattatttaaaagacacgattaacttgcgttttctttctcttaaattatgttatatgccgctgttaaaggtggactaattaatgacattgtggcattggt |
32910044 |
T |
|
| Q |
210 |
gctctaattattatactacttagtatcttaatcttgatcgaatcaacacgttgtttaaatgtggcacaatatatggcaaggacacaaaatattactacaa |
309 |
Q |
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| T |
32910043 |
gctctaattattatac----tagtatcttaatcttgatcgaatcaacacattgtttaaatgtggcacaatatatggcaaggacacaaaatattactacaa |
32909948 |
T |
|
| Q |
310 |
ttcacaat-nnnnnnntcaacacaaaaccaattacaaatgagccatcaacacaaaatatgaataaagcataacgctcaagctatggacctcaaacatata |
408 |
Q |
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| T |
32909947 |
ttcacaataaaaaaaatcaacacaaaaccaattacaaatgagccatcaacacaaaaaatgaataaagcataacgctcaagctatggacctcaaacatata |
32909848 |
T |
|
| Q |
409 |
gtaagatgtgtccgcgatttatgtaacttaactttgaatagattctaaagattaccatgagccatcaccatgacataaatttaatatactctaaaaatta |
508 |
Q |
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| T |
32909847 |
gtaagatgtgtccgcgatttatgtaacttaactttgaatagattctaaagattaccatgagccatcaccatgacataaatttaatatattctaaaaatta |
32909748 |
T |
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| Q |
509 |
cccatga |
515 |
Q |
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| T |
32909747 |
cccatga |
32909741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 52 - 160
Target Start/End: Complemental strand, 32932086 - 32931978
Alignment:
| Q |
52 |
atgtgtttgtcataattcacaacccactatgtataactggaaaaagtgaagatcaattaattatttaaaagacacgattaactggcgttttctttctctt |
151 |
Q |
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||||||| || || |||||||| ||||||||||||| |||||||||||||||| || |||| |||||| | || ||||| || | |||||||||||||| |
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| T |
32932086 |
atgtgttggttatgattcacaatccactatgtataaatggaaaaagtgaagatgaaataataatttaagaaacgtgattatctcgtgttttctttctctt |
32931987 |
T |
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| Q |
152 |
aaattatgt |
160 |
Q |
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| T |
32931986 |
aaattatgt |
32931978 |
T |
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