View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20553_low_30 (Length: 332)

Name: NF20553_low_30
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20553_low_30
NF20553_low_30
[»] scaffold0022 (4 HSPs)
scaffold0022 (1-155)||(77208-77361)
scaffold0022 (1-155)||(43488-43640)
scaffold0022 (158-218)||(43385-43445)
scaffold0022 (158-218)||(77105-77165)
[»] chr5 (14 HSPs)
chr5 (213-316)||(12466686-12466789)
chr5 (24-142)||(30085575-30085692)
chr5 (34-146)||(4944426-4944538)
chr5 (24-146)||(11617818-11617939)
chr5 (32-145)||(7505321-7505434)
chr5 (35-107)||(16596790-16596862)
chr5 (56-147)||(21521454-21521545)
chr5 (56-147)||(21532020-21532111)
chr5 (49-140)||(41484256-41484347)
chr5 (39-109)||(9161705-9161775)
chr5 (82-146)||(15024025-15024089)
chr5 (59-107)||(16921444-16921492)
chr5 (24-140)||(21018105-21018221)
chr5 (35-99)||(7506283-7506347)
[»] chr2 (12 HSPs)
chr2 (33-146)||(17999006-17999119)
chr2 (34-147)||(28219680-28219793)
chr2 (24-147)||(10354833-10354956)
chr2 (24-142)||(28198551-28198668)
chr2 (32-146)||(22017713-22017827)
chr2 (23-147)||(23701623-23701745)
chr2 (35-171)||(8856016-8856152)
chr2 (35-147)||(7444439-7444549)
chr2 (23-146)||(44247008-44247129)
chr2 (35-101)||(12432863-12432928)
chr2 (40-105)||(822502-822567)
chr2 (32-132)||(14323012-14323111)
[»] chr4 (14 HSPs)
chr4 (35-146)||(50859398-50859509)
chr4 (32-147)||(31228994-31229109)
chr4 (35-208)||(41222915-41223087)
chr4 (24-140)||(35292627-35292743)
chr4 (23-146)||(48085196-48085317)
chr4 (24-142)||(13779919-13780036)
chr4 (24-142)||(35033210-35033327)
chr4 (34-145)||(4292009-4292119)
chr4 (33-146)||(21261095-21261208)
chr4 (38-140)||(25054764-25054866)
chr4 (37-146)||(46142604-46142713)
chr4 (7-70)||(42245420-42245482)
chr4 (41-139)||(30670599-30670697)
chr4 (23-71)||(41809231-41809278)
[»] chr3 (12 HSPs)
chr3 (32-130)||(24373430-24373528)
chr3 (24-147)||(39439291-39439414)
chr3 (21-147)||(42028645-42028770)
chr3 (33-147)||(44714005-44714119)
chr3 (24-142)||(25046047-25046164)
chr3 (24-142)||(32279033-32279150)
chr3 (35-105)||(35231281-35231351)
chr3 (34-135)||(40022935-40023036)
chr3 (19-98)||(27011857-27011934)
chr3 (35-101)||(2144599-2144664)
chr3 (104-141)||(42958275-42958312)
chr3 (93-145)||(23420500-23420552)
[»] scaffold0039 (1 HSPs)
scaffold0039 (35-147)||(57622-57734)
[»] chr8 (9 HSPs)
chr8 (35-147)||(34924052-34924164)
chr8 (22-140)||(38680456-38680575)
chr8 (34-147)||(29844924-29845036)
chr8 (35-101)||(14111691-14111757)
chr8 (35-101)||(20307721-20307787)
chr8 (35-101)||(21094354-21094420)
chr8 (1-70)||(30800940-30801011)
chr8 (35-101)||(44605891-44605957)
chr8 (35-114)||(42024777-42024854)
[»] chr7 (11 HSPs)
chr7 (23-138)||(12634045-12634159)
chr7 (24-142)||(19626090-19626207)
chr7 (35-107)||(5350342-5350414)
chr7 (35-146)||(19848426-19848532)
chr7 (33-146)||(36656832-36656945)
chr7 (49-147)||(3215211-3215309)
chr7 (35-101)||(28300778-28300843)
chr7 (34-71)||(260960-260997)
chr7 (37-145)||(23416339-23416447)
chr7 (23-98)||(23416580-23416653)
chr7 (35-100)||(45843753-45843818)
[»] chr1 (19 HSPs)
chr1 (33-147)||(34970797-34970911)
chr1 (22-138)||(41404807-41404922)
chr1 (24-147)||(48046974-48047097)
chr1 (52-147)||(49765566-49765661)
chr1 (34-146)||(15582249-15582361)
chr1 (33-147)||(8099671-8099784)
chr1 (32-140)||(41419074-41419183)
chr1 (35-105)||(35306265-35306335)
chr1 (34-146)||(7521707-7521819)
chr1 (35-146)||(32573691-32573802)
chr1 (34-112)||(50138929-50139006)
chr1 (35-146)||(2664249-2664359)
chr1 (24-96)||(40641432-40641504)
chr1 (35-101)||(29465520-29465585)
chr1 (41-99)||(47980618-47980675)
chr1 (35-72)||(50108489-50108526)
chr1 (53-101)||(23474462-23474509)
chr1 (77-145)||(45848597-45848665)
chr1 (103-147)||(50138450-50138494)
[»] chr6 (5 HSPs)
chr6 (38-136)||(29644618-29644716)
chr6 (38-149)||(7314234-7314345)
chr6 (37-141)||(13106518-13106622)
chr6 (32-94)||(6193088-6193149)
chr6 (35-101)||(10144760-10144825)
[»] scaffold0011 (1 HSPs)
scaffold0011 (34-136)||(8574-8675)
[»] scaffold0204 (1 HSPs)
scaffold0204 (36-147)||(11715-11826)
[»] scaffold0110 (1 HSPs)
scaffold0110 (23-98)||(37940-38013)
[»] scaffold0075 (1 HSPs)
scaffold0075 (35-101)||(12156-12221)


Alignment Details
Target: scaffold0022 (Bit Score: 135; Significance: 3e-70; HSPs: 4)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 77361 - 77208
Alignment:
Q  1 aatattgatgctttattgttaattttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaat 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  77361 aatattgatgctttattgttaattttttaaaataaagggtaaaattgaaataaaaaagttataactcattccgttctgtctactttccaaacaatggaat 77262  T
Q  101 gagaaattagtttcattccgtcgtaaaatatccaaacaatagaatgagaacattc 155  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  77261 gagaaattagtttcattccgtcgtaaaatatccaaacaatggaatg-gaacattc 77208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 43640 - 43488
Alignment:
Q  1 aatattgatgctttattgttaattttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaat 100  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43640 aatattgatgctttattgttaatttttaaa-ataaagggtaaaattgaaataaaaaagttataactcattccgttctgtctactttccaaacaatggaat 43542  T
Q  101 gagaaattagtttcattccgtcgtaaaatatccaaacaatagaatgagaacattc 155  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  43541 gagaaattagtttcattccgtcgtaaaatatccaaacaatggaatg-gaacattc 43488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 43445 - 43385
Alignment:
Q  158 tccattctgttccgcaccactccgttccgttaattttaagatatccaaacaaaaccttaag 218  Q
    |||||||  |||||| || ||||||| ||||| |||||||||||||||||||| |||||||    
T  43445 tccattccattccgctccgctccgtttcgttagttttaagatatccaaacaaagccttaag 43385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 77165 - 77105
Alignment:
Q  158 tccattctgttccgcaccactccgttccgttaattttaagatatccaaacaaaaccttaag 218  Q
    |||||||  |||||| || ||||||| ||||| |||||||||||||||||||| |||||||    
T  77165 tccattccattccgctccgctccgtttcgttagttttaagatatccaaacaaagccttaag 77105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 213 - 316
Target Start/End: Original strand, 12466686 - 12466789
Alignment:
Q  213 cttaagattctgttctcgtcgttgtcgtgttccattcaaaagaagaacgaacaatgaacagttcatcaccggctcattcatcaatttcaacgacggcggt 312  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12466686 cttaagattccgttctcgtcgttgtcgtgttccattcaaaagaagaacgaacaatgaacagttcatcaccggctcattcatcaatttcaacgacggcggt 12466785  T
Q  313 cgtg 316  Q
    ||||    
T  12466786 cgtg 12466789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 30085575 - 30085692
Alignment:
Q  24 tttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcg 123  Q
    |||||||| |||||||||||| ||||||||||||||||||| |||||||||||| |  ||||||||||||||||| ||  |||||||||  ||||||| |    
T  30085575 tttttaag-taaagggtaaaaatgaaataaaaaagttataaatcattccgttccattcactttccaaacaatggagtggaaaattagttcaattccgtag 30085673  T
Q  124 taaaatatccaaacaatag 142  Q
    |||||||||||||||||||    
T  30085674 taaaatatccaaacaatag 30085692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 4944426 - 4944538
Alignment:
Q  34 aaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatcc 133  Q
    ||||||||||| || ||||||||||||||| || ||||| ||||||| ||||||||||||||||| |  |||||||||| |||| ||||||| |||||||    
T  4944426 aaagggtaaaaatggaataaaaaagttatatctaattccattccgtccactttccaaacaatggagtatgaaattagttccatttcgtcgtataatatcc 4944525  T
Q  134 aaacaatagaatg 146  Q
    ||||||| |||||    
T  4944526 aaacaatggaatg 4944538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 11617818 - 11617939
Alignment:
Q  24 tttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcg 123  Q
    |||||||  ||||||||||||||| ||||||| |||||||||   |||||||||||  ||||||||||||||||| || ||||||||||||||||||||     
T  11617818 tttttaaactaaagggtaaaattggaataaaa-agttataacatgttccgttccgttcactttccaaacaatggagtgggaaattagtttcattccgtct 11617916  T
Q  124 taaaatatccaaacaatagaatg 146  Q
    | |||||| |||||||| |||||    
T  11617917 tgaaatattcaaacaatggaatg 11617939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 7505434 - 7505321
Alignment:
Q  32 ataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatat 131  Q
    ||||| |||||||||| |||||||||| ||||||||||||||||||||| ||||| ||||||||||||||  ||||||| | |||||| || |||| |||    
T  7505434 ataaaaggtaaaattggaataaaaaagatataactcattccgttccgtcaacttttcaaacaatggaatggaaaattagctccattccatcataaagtat 7505335  T
Q  132 ccaaacaatagaat 145  Q
    | ||| ||| ||||    
T  7505334 ctaaataatggaat 7505321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 16596862 - 16596790
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaat 107  Q
    ||||||||||||| |||||||||||||||||||||||| || | || | ||| ||||||||||||||||||||    
T  16596862 aagggtaaaattggaataaaaaagttataactcattccattacatcaatttttcaaacaatggaatgagaaat 16596790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 21521454 - 21521545
Alignment:
Q  56 aagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaacaatagaatga 147  Q
    ||||||||| ||||||| ||||||  ||||| ||||||||||||| || |||| ||| |||||| ||||| |||||||||||||| ||||||    
T  21521454 aagttataattcattccattccgttcacttttcaaacaatggaataagtaatttgttccattccatcgtataatatccaaacaatggaatga 21521545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 21532020 - 21532111
Alignment:
Q  56 aagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaacaatagaatga 147  Q
    ||||||||| ||||||| ||||||  ||||| ||||||||||||| || |||| ||| |||||| ||||| |||||||||||||| ||||||    
T  21532020 aagttataattcattccattccgttcacttttcaaacaatggaataagtaatttgttccattccatcgtataatatccaaacaatggaatga 21532111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 41484256 - 41484347
Alignment:
Q  49 aataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaacaat 140  Q
    |||||| || |||||| ||||||||||||||  |||||| ||||||||||||||  |||| ||| | |||| ||||||||||||||||||||    
T  41484256 aataaataacttataattcattccgttccgttcactttctaaacaatggaatgaataatttgttccgttccatcgtaaaatatccaaacaat 41484347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 9161705 - 9161775
Alignment:
Q  39 gtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaatta 109  Q
    ||||||||| ||||||||| | ||||||||| | |||||||  | ||||||||||||||||||||||||||    
T  9161705 gtaaaattggaataaaaaattcataactcatcctgttccgttgattttccaaacaatggaatgagaaatta 9161775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 15024025 - 15024089
Alignment:
Q  82 actttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaacaatagaatg 146  Q
    |||||| |||||||||||||| || || ||| |||||||||||| |||| | |||||||||||||    
T  15024025 actttctaaacaatggaatgaaaagtttgttccattccgtcgtacaatacctaaacaatagaatg 15024089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 16921444 - 16921492
Alignment:
Q  59 ttataactcattccgttccgtctactttccaaacaatggaatgagaaat 107  Q
    |||||||||||||  ||||||| | ||||||||||||||||||||||||    
T  16921444 ttataactcattctattccgtcaattttccaaacaatggaatgagaaat 16921492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 21018105 - 21018221
Alignment:
Q  24 tttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcg 123  Q
    |||||||  |||| ||| ||| |||||||||||||||||||| |||    |||| || ||||| |||||||| |  |||||||||||||| |||| | |     
T  21018105 tttttaaactaaaaggtgaaaatgaaataaaaaagttataacacatcttattccatccacttttcaaacaatagggtgagaaattagttttattctgcca 21018204  T
Q  124 taaaatatccaaacaat 140  Q
    |||||||| ||||||||    
T  21018205 taaaatattcaaacaat 21018221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 7506347 - 7506283
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaa 99  Q
    |||||||||| || ||| || || ||||||||  |||| ||||||| ||||||||||||||||||    
T  7506347 aagggtaaaaatggaattaagaaattataacttgttccattccgtccactttccaaacaatggaa 7506283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 17999119 - 17999006
Alignment:
Q  33 taaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatc 132  Q
    |||||||||||| ||||||||||||||||| || | | |||||||||| ||||| |||||||||||||| |||||||||| ||||||||| |||||||||    
T  17999119 taaagggtaaaaatgaaataaaaaagttatgacacttcccgttccgtccacttttcaaacaatggaatgggaaattagttccattccgtcataaaatatc 17999020  T
Q  133 caaacaatagaatg 146  Q
    ||||||||||||||    
T  17999019 caaacaatagaatg 17999006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 28219680 - 28219793
Alignment:
Q  34 aaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatcc 133  Q
    ||||||||||| ||||||||||||||||||||| ||| | ||||||| ||||||||||||||||| || |||||||||| ||||||| |||| |||||||    
T  28219680 aaagggtaaaaatgaaataaaaaagttataactaatttcattccgtccactttccaaacaatggagtgggaaattagttccattccgccgtataatatcc 28219779  T
Q  134 aaacaatagaatga 147  Q
    ||||||| ||||||    
T  28219780 aaacaatggaatga 28219793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 10354833 - 10354956
Alignment:
Q  24 tttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcg 123  Q
    |||||||  ||||||||||||||| |||||||||||||||||   |||||||||||  || |||||||||||||| || |||||||||| |||||||||     
T  10354833 tttttaaactaaagggtaaaattggaataaaaaagttataacatgttccgttccgttcaccttccaaacaatggagtgggaaattagttccattccgtct 10354932  T
Q  124 taaaatatccaaacaatagaatga 147  Q
    | ||||||||||||||| ||||||    
T  10354933 tgaaatatccaaacaatggaatga 10354956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 28198668 - 28198551
Alignment:
Q  24 tttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcg 123  Q
    |||||||| |||||||||||| || |||||||||||||||| |||||||||||| |  ||||||||||||||| | ||  ||||||||| |||||||| |    
T  28198668 tttttaag-taaagggtaaaaatggaataaaaaagttataaatcattccgttccattcactttccaaacaatgaagtggaaaattagttccattccgtag 28198570  T
Q  124 taaaatatccaaacaatag 142  Q
    |||||||||||||||||||    
T  28198569 taaaatatccaaacaatag 28198551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 22017827 - 22017713
Alignment:
Q  32 ataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatat 131  Q
    ||||||||||||||   ||||||||| |||||| ||||||||||||||| | ||||| ||||||||||||| ||||||||| |||||| | ||||| |||    
T  22017827 ataaagggtaaaatatgaataaaaaaattataattcattccgttccgtcaattttcctaacaatggaatgaaaaattagttgcattccattgtaaagtat 22017728  T
Q  132 ccaaacaatagaatg 146  Q
    || |||||| |||||    
T  22017727 ccgaacaatggaatg 22017713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 23701623 - 23701745
Alignment:
Q  23 ttttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtc 122  Q
    |||||||| |||||||  ||||||| ||||||| |||||||||||||||| || | || ||||||||||||||||||||  |||||||| | |||| |||    
T  23701623 ttttttaa-ataaaggtcaaaattggaataaaa-agttataactcattccatttcatcaactttccaaacaatggaatggaaaattagtcttattctgtc 23701720  T
Q  123 gtaaaatatccaaacaatagaatga 147  Q
     ||||||||| || |||| ||||||    
T  23701721 ataaaatatctaagcaatggaatga 23701745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 171
Target Start/End: Original strand, 8856016 - 8856152
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccg-tctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatcc 133  Q
    |||||||||| |||||||||||||||||||| |||||| ||||| ||   ||||||||||||||||  || |||| ||| |  |||||| || |||| ||    
T  8856016 aagggtaaaaatgaaataaaaaagttataacacattccattccgttcatttttccaaacaatggaacaagtaatttgttccgctccgtcatataataccc 8856115  T
Q  134 aaacaatagaatgagaacattccttccattctgttccg 171  Q
    |||||||||||| |||| |||  |||||||| ||||||    
T  8856116 aaacaatagaat-agaatatttattccattccgttccg 8856152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 7444549 - 7444439
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatcca 134  Q
    ||||||||||||| ||||||||| ||||||||| ||||||| |||| | |||||||||||| |||| | |||| |||| | |||| || |||| ||||||    
T  7444549 aagggtaaaattggaataaaaaatttataactcgttccgtttcgtc-aatttccaaacaat-gaataaaaaataagttccgttccatcataaagtatcca 7444452  T
Q  135 aacaatagaatga 147  Q
    ||||||| |||||    
T  7444451 aacaatataatga 7444439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 44247008 - 44247129
Alignment:
Q  23 ttttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtc 122  Q
    |||||||| ||||||| |||||||| ||||||||| ||||||  |||||| ||| ||| |||| |||||||||||| ||  || |||||||| |||| ||    
T  44247008 ttttttaa-ataaaggttaaaattggaataaaaaa-ttataatacattccattctgtcaacttcccaaacaatggagtggaaagttagtttcgttccatc 44247105  T
Q  123 gtaaaatatccaaacaatagaatg 146  Q
    || |||||||||||| || |||||    
T  44247106 gtgaaatatccaaacgatggaatg 44247129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 12432928 - 12432863
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatg 101  Q
    |||||||||| || |||||||| ||||||| | ||||| ||||||| ||||||||||||||||||||    
T  12432928 aagggtaaaaatggaataaaaa-gttataatttattccattccgtcaactttccaaacaatggaatg 12432863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 822567 - 822502
Alignment:
Q  40 taaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaa 105  Q
    ||||| || ||||||||  |||||||||||| | ||| |||| ||||||||| |||||||||||||    
T  822567 taaaaatggaataaaaatattataactcattacattctgtctgctttccaaataatggaatgagaa 822502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 14323111 - 14323012
Alignment:
Q  32 ataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatat 131  Q
    |||||||||||||||  ||||||||| |||||||| ||| | ||  ||| | |||||||||||| |||||| ||||||||  |||||| || |||| |||    
T  14323111 ataaagggtaaaattagaataaaaaa-ttataacttatttcattttgtcaaatttccaaacaatagaatgaaaaattagtaccattccatcataaagtat 14323013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 50859398 - 50859509
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatcca 134  Q
    |||||||||| || |||||||||||||||||||||||| ||||||| |||||||||| |||||| || ||||||||||||||||||||  ||||||||||    
T  50859398 aagggtaaaaatggaataaaaaagttataactcattccattccgtccactttccaaataatggagtgggaaattagtttcattccgtcaaaaaatatcca 50859497  T
Q  135 aacaatagaatg 146  Q
    |||||| |||||    
T  50859498 aacaatggaatg 50859509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 31228994 - 31229109
Alignment:
Q  32 ataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatat 131  Q
    ||||| |||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||| |||||||||  || ||||||||    
T  31228994 ataaaaggtaaaattggaataaaaatgttataactcattccgttccgtcaactttccaaacaatggattgtgaaatttgtttcattctctcataaaatat 31229093  T
Q  132 ccaaacaatagaatga 147  Q
    ||||||| | ||||||    
T  31229094 ccaaacagtggaatga 31229109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 35 - 208
Target Start/End: Complemental strand, 41223087 - 41222915
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatcca 134  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||  ||||||||||||||||||||  ||| ||||| | |||| || |||| ||||||    
T  41223087 aagggtaaaattggaataaaaaagttataactcgttccgttccgttaactttccaaacaatggaatggaaaactagttccgttccatcataaagtatcca 41222988  T
Q  135 aacaatagaatgagaacattccttccattctgttccgcaccactccgttccgttaattttaagatatccaaaca 208  Q
    |||||| ||||| |||  ||  |||||||| ||||||  ||| ||||||||||| ||||| |  ||||||||||    
T  41222987 aacaatggaatg-gaatctttattccattccgttccgttccattccgttccgttgattttcacttatccaaaca 41222915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 35292627 - 35292743
Alignment:
Q  24 tttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcg 123  Q
    |||||||  ||||||||||||||| |||||||||||||||||   |||||||| ||  ||||||||||||||||| || |||||||||| |||||||||     
T  35292627 tttttaaactaaagggtaaaattggaataaaaaagttataacatgttccgttctgttcactttccaaacaatggagtgggaaattagttccattccgtct 35292726  T
Q  124 taaaatatccaaacaat 140  Q
    | |||||||||||||||    
T  35292727 tgaaatatccaaacaat 35292743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 48085196 - 48085317
Alignment:
Q  23 ttttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtc 122  Q
    |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| | ||| ||||||| ||||||  ||||||| |||||||| ||    
T  48085196 ttttttaa-ataaagggtaaaattggaataaaaaagttataattaattccgttccgtcgatttttcaaacaaaggaatggaaaattagcttcattccatc 48085294  T
Q  123 gtaaaatatccaaacaatagaatg 146  Q
    || ||||||||||||||| |||||    
T  48085295 gt-aaatatccaaacaatggaatg 48085317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 13779919 - 13780036
Alignment:
Q  24 tttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcg 123  Q
    |||||||| |||| ||||||| || ||||||||| |||||| |||||||||||| |  ||||||||||||||||| ||  ||||||||| |||||||| |    
T  13779919 tttttaag-taaatggtaaaaatggaataaaaaaattataaatcattccgttccattcactttccaaacaatggagtggaaaattagttccattccgtag 13780017  T
Q  124 taaaatatccaaacaatag 142  Q
    |||||||||||||||||||    
T  13780018 taaaatatccaaacaatag 13780036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 35033327 - 35033210
Alignment:
Q  24 tttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcg 123  Q
    |||||||| |||| ||||||| || ||||||||| |||||| |||||||||||| |  ||||||||||||||||| ||  ||||||||| |||||||| |    
T  35033327 tttttaag-taaatggtaaaaatggaataaaaaaattataaatcattccgttccattcactttccaaacaatggagtggaaaattagttccattccgtag 35033229  T
Q  124 taaaatatccaaacaatag 142  Q
    |||||||||||||||||||    
T  35033228 taaaatatccaaacaatag 35033210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 4292119 - 4292009
Alignment:
Q  34 aaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaat-tagtttcattccgtcgtaaaatatc 132  Q
    |||||||||||||| ||| |||  | |||||||||||| |||||||| ||||||||||||||||||| |||||| ||  ||||||||||| |||||||||    
T  4292119 aaagggtaaaattggaattaaag-gctataactcattctgttccgtccactttccaaacaatggaat-agaaatctaaattcattccgtcataaaatatc 4292022  T
Q  133 caaacaatagaat 145  Q
    |||||||| ||||    
T  4292021 caaacaatggaat 4292009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 21261208 - 21261095
Alignment:
Q  33 taaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatc 132  Q
    |||||||||||   | |||||||||||||||||| ||||| ||||||  ||||||||||||||||| |   |||||||| |||||||||| || ||||||    
T  21261208 taaagggtaaataaggaataaaaaagttataactaattccattccgttcactttccaaacaatggagtagaaaattagtctcattccgtcatataatatc 21261109  T
Q  133 caaacaatagaatg 146  Q
     ||||||| |||||    
T  21261108 aaaacaatggaatg 21261095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 25054764 - 25054866
Alignment:
Q  38 ggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaac 137  Q
    |||||||||| |||||||||||||||| | ||||  ||||||| ||||| |||| |||||| ||  ||||| ||| |||||| |||||||||| ||||||    
T  25054764 ggtaaaattggaataaaaaagttataatttattctattccgtcaacttttcaaaaaatggagtggtaaatttgttccattccatcgtaaaatacccaaac 25054863  T
Q  138 aat 140  Q
    |||    
T  25054864 aat 25054866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 46142604 - 46142713
Alignment:
Q  37 gggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaa 136  Q
    |||||||| || |||||||||||||||| ||||||| || |||   |||||||||||||||||||| || ||  || |  |||||||| |||||||||||    
T  46142604 gggtaaaaatggaataaaaaagttataattcattccatttcgttctctttccaaacaatggaatgaaaattttattccgctccgtcgtgaaatatccaaa 46142703  T
Q  137 caatagaatg 146  Q
    |||| |||||    
T  46142704 caatggaatg 46142713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 42245482 - 42245420
Alignment:
Q  7 gatgctttattgttaattttttaagataaagggtaaaattgaaataaaaaagttataactcatt 70  Q
    ||||||||||||||  ||||| || ||||| ||||||||| |||||||||||||||||||||||    
T  42245482 gatgctttattgttgctttttcaa-ataaaaggtaaaattaaaataaaaaagttataactcatt 42245420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 30670599 - 30670697
Alignment:
Q  41 aaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaacaa 139  Q
    ||||||| ||||||||||||||| ||||||  |||| ||| | |||| ||| ||||| ||  |||| |||||  ||||| |||||||||||||||||||    
T  30670599 aaaattggaataaaaaagttatagctcattttgttctgtcaattttctaaaaaatgggatatgaaactagttatattccatcgtaaaatatccaaacaa 30670697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 41809278 - 41809231
Alignment:
Q  23 ttttttaagataaagggtaaaattgaaataaaaaagttataactcattc 71  Q
    |||||||| |||||||||||||||| ||||||| | |||||||||||||    
T  41809278 ttttttaa-ataaagggtaaaattggaataaaatatttataactcattc 41809231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 24373528 - 24373430
Alignment:
Q  32 ataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaata 130  Q
    ||||||||||||||||||||||||||||||||| |  ||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24373528 ataaagggtaaaattgaaataaaaaagttataatttgttctgttccatccactttccaaacaatggaatgggaaattagtttcattccgtcgtaaaata 24373430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 39439414 - 39439291
Alignment:
Q  24 tttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcg 123  Q
    |||||||  ||||||||||||||| |||||||||||||||||   |||||||||||  ||||| ||||||||||| || ||||||||||||||||||||     
T  39439414 tttttaaactaaagggtaaaattggaataaaaaagttataacatgttccgttccgttcacttttcaaacaatggagtgggaaattagtttcattccgtct 39439315  T
Q  124 taaaatatccaaacaatagaatga 147  Q
    | ||||||||||||||| ||||||    
T  39439314 tgaaatatccaaacaatggaatga 39439291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 42028770 - 42028645
Alignment:
Q  21 aattttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccg 120  Q
    |||||| ||||| ||||||||||| || |||||||||||||||||| ||| | ||||||| ||||||||||||||||| || |||||||||| |||||||    
T  42028770 aattttctaaga-aaagggtaaaaatggaataaaaaagttataactaatttcattccgtccactttccaaacaatggagtgggaaattagttccattccg 42028672  T
Q  121 tcgtaaaatatccaaacaatagaatga 147  Q
     |||| |||||||||||||| ||||||    
T  42028671 ccgtataatatccaaacaatggaatga 42028645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 44714005 - 44714119
Alignment:
Q  33 taaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatc 132  Q
    ||||||||||||||| ||||||||| |||||| ||||||||||||||  | || ||||||||| |||||| ||||||||| |||||| ||||||||||||    
T  44714005 taaagggtaaaattggaataaaaaaattataattcattccgttccgttcatttgccaaacaatagaatgaaaaattagttccattccatcgtaaaatatc 44714104  T
Q  133 caaacaatagaatga 147  Q
    |||||||| ||||||    
T  44714105 caaacaattgaatga 44714119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 25046047 - 25046164
Alignment:
Q  24 tttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcg 123  Q
    |||||||| |||||||||||| || |||||||||||||||| |||||||||||| |  |||||| |||||||||| ||  |||||||||  ||||||| |    
T  25046047 tttttaag-taaagggtaaaaatggaataaaaaagttataaatcattccgttccattcactttctaaacaatggagtggaaaattagttcaattccgtag 25046145  T
Q  124 taaaatatccaaacaatag 142  Q
    |||||||||||||||||||    
T  25046146 taaaatatccaaacaatag 25046164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 32279033 - 32279150
Alignment:
Q  24 tttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcg 123  Q
    |||||||| |||||||||||| || ||| |||||||||||| |||||||||||| |  ||||||||||||||||| ||  |||||||||  ||||||| |    
T  32279033 tttttaag-taaagggtaaaaatggaatgaaaaagttataaatcattccgttccattcactttccaaacaatggagtggaaaattagttcaattccgtag 32279131  T
Q  124 taaaatatccaaacaatag 142  Q
    |||||||||||||||||||    
T  32279132 taaaatatccaaacaatag 32279150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 35231351 - 35231281
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaa 105  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||||| | ||||||||||||||||||||||    
T  35231351 aagggtaaaattggaataaaaaaattataactcattccattccgtcaattttccaaacaatggaatgagaa 35231281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 40023036 - 40022935
Alignment:
Q  34 aaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatcc 133  Q
    |||||||||||||  ||||||||| ||||||||||||  |||||||| |||||  ||| | |||||||| ||||||||| | |||  |||||||||||||    
T  40023036 aaagggtaaaattagaataaaaaaattataactcattatgttccgtccactttttaaatagtggaatgaaaaattagttccgttctatcgtaaaatatcc 40022937  T
Q  134 aa 135  Q
    ||    
T  40022936 aa 40022935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 27011857 - 27011934
Alignment:
Q  19 ttaattttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatgga 98  Q
    |||||||||||| ||||||| |||||||| ||||||||| ||||||  |||||| || |||| |||||||||||||||||    
T  27011857 ttaattttttaa-ataaaggttaaaattggaataaaaaa-ttataatacattccatttcgtcaactttccaaacaatgga 27011934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 2144664 - 2144599
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatg 101  Q
    |||||||||| || |||||||| ||||||| | ||||| ||||||| ||||||||||||||||||||    
T  2144664 aagggtaaaaatggaataaaaa-gttataatttattccattccgtcaactttccaaacaatggaatg 2144599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 42958275 - 42958312
Alignment:
Q  104 aaattagtttcattccgtcgtaaaatatccaaacaata 141  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42958275 aaattagtttccttccgtcgtaaaatatccaaacaata 42958312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 23420500 - 23420552
Alignment:
Q  93 aatggaatgagaaattagtttcattccgtcgtaaaatatccaaacaatagaat 145  Q
    |||||||||  |||||||||||||||| || ||||||||||||||||| ||||    
T  23420500 aatggaatggaaaattagtttcattccatcataaaatatccaaacaatggaat 23420552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 57622 - 57734
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatcca 134  Q
    ||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||  ||| ||||| | |||| || |||| ||||||    
T  57622 aagggtaaaattgaaataaaaaagttataactcgttccgttccgttaactttccaaacaatggaatggaaaactagttccgttccatcataaagtatcca 57721  T
Q  135 aacaatagaatga 147  Q
    |||||| ||||||    
T  57722 aacaatggaatga 57734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 34924164 - 34924052
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatcca 134  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||  ||||||||||||||||||||  ||| ||||||| |||| || |||| ||||||    
T  34924164 aagggtaaaattggaataaaaaagttataactcgttccgttccgttaactttccaaacaatggaatggaaaactagtttcgttccatcataaagtatcca 34924065  T
Q  135 aacaatagaatga 147  Q
    |||||| ||||||    
T  34924064 aacaatggaatga 34924052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 38680456 - 38680575
Alignment:
Q  22 attttttaagataaagggtaaaattgaaataaaa-aagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccg 120  Q
    |||||||||  ||||||||||||  | ||||||| |||||||||| | || ||||||||| ||||||||| ||||||| || ||||||||||  |||||     
T  38680456 attttttaaactaaagggtaaaaaaggaataaaaaaagttataacacttttcgttccgtccactttccaagcaatggagtgggaaattagttcaattcca 38680555  T
Q  121 tcgtaaaatatccaaacaat 140  Q
    ||||||||||||||||||||    
T  38680556 tcgtaaaatatccaaacaat 38680575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 29844924 - 29845036
Alignment:
Q  34 aaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatcc 133  Q
    |||||||||||||||||||||| ||||||||  ||||  ||||| || ||||  |||||||||||||| |||||||||| ||||||||| | ||||||||    
T  29844924 aaagggtaaaattgaaataaaa-agttataatccattatgttccatcgacttctcaaacaatggaatgggaaattagttccattccgtcattaaatatcc 29845022  T
Q  134 aaacaatagaatga 147  Q
    ||||| | ||||||    
T  29845023 aaacagtggaatga 29845036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 14111757 - 14111691
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatg 101  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||   ||||||||||||||||||||    
T  14111757 aagggtaaaattggaataaaaaagttataactcgttccgttccgctaactttccaaacaatggaatg 14111691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 20307721 - 20307787
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatg 101  Q
    |||||||||| || |||||||| ||||||| | ||||| ||||||| |||||||||||| |||||||    
T  20307721 aagggtaaaaatggaataaaaatgttataatttattccattccgtcaactttccaaacattggaatg 20307787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 21094354 - 21094420
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatg 101  Q
    |||||||||| || |||||||| ||||||| | ||||| ||||||| |||||||||||| |||||||    
T  21094354 aagggtaaaaatggaataaaaatgttataatttattccattccgtcaactttccaaacattggaatg 21094420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 30800940 - 30801011
Alignment:
Q  1 aatattgatgctttattgttaattttttaagataaagggtaaaattgaaata---aaaaagttataactcatt 70  Q
    |||||||||| |||||||||  ||||| || |||||||||||||||||||||   ||||||||||||||||||    
T  30800940 aatattgatgttttattgttgctttttaaa-ataaagggtaaaattgaaataaataaaaagttataactcatt 30801011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 44605891 - 44605957
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatg 101  Q
    |||||||||| || |||||||| ||||||| | ||||| ||||||| |||||||||||| |||||||    
T  44605891 aagggtaaaaatggaataaaaatgttataatttattccattccgtcaactttccaaacattggaatg 44605957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 42024854 - 42024777
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttc 114  Q
    ||||||||||||| ||||||||| ||||||||  ||||||| |||| | |||||||||||| |||| | |||||||||||    
T  42024854 aagggtaaaattggaataaaaaatttataacttgttccgtttcgtc-aatttccaaacaat-gaataaaaaattagtttc 42024777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 12634045 - 12634159
Alignment:
Q  23 ttttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtc 122  Q
    |||||||| |||||||||| ||||| |||||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||||||  || |||| ||||    
T  12634045 ttttttaa-ataaagggtataattggaataaaaatgttataattcattccgttccgtcgactttccaaacaatggaatgtgaaatttattccatttcgtc 12634143  T
Q  123 gtaaaatatccaaaca 138  Q
     |||||||||||||||    
T  12634144 ataaaatatccaaaca 12634159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 19626090 - 19626207
Alignment:
Q  24 tttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcg 123  Q
    |||||||| |||||||||||| || ||||||||| |||||| |||||||||||| |  |||||||||||||| || ||  ||||||||| |||||||| |    
T  19626090 tttttaag-taaagggtaaaaatggaataaaaaaattataaatcattccgttccattcactttccaaacaattgagtggaaaattagttccattccgtag 19626188  T
Q  124 taaaatatccaaacaatag 142  Q
    |||||||||||||||||||    
T  19626189 taaaatatccaaacaatag 19626207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 5350342 - 5350414
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaat 107  Q
    ||||||||||||||||| |||||||||||||| ||||| || |||| |||||||||||||| |||||||||||    
T  5350342 aagggtaaaattgaaattaaaaagttataacttattccatttcgtcaactttccaaacaatagaatgagaaat 5350414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 19848426 - 19848532
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatcca 134  Q
    ||||||||||||||||||||||||||||||||| |||||||      ||||||||||||||||||||  ||| ||||| | |||| || |||| ||||||    
T  19848426 aagggtaaaattgaaataaaaaagttataactcgttccgtta-----actttccaaacaatggaatggaaaactagttccgttccatcataaagtatcca 19848520  T
Q  135 aacaatagaatg 146  Q
    |||||| |||||    
T  19848521 aacaatggaatg 19848532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 36656945 - 36656832
Alignment:
Q  33 taaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatc 132  Q
    ||||||| |||| |||||||||||||||||||| | |||||||||||  ||  |||||||||||||  |  || |||||| ||||||||| |||||||||    
T  36656945 taaagggcaaaaatgaaataaaaaagttataacacgttccgttccgttcacgatccaaacaatggagcggaaagttagttccattccgtcataaaatatc 36656846  T
Q  133 caaacaatagaatg 146  Q
    ||| |||| |||||    
T  36656845 caagcaatggaatg 36656832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 3215309 - 3215211
Alignment:
Q  49 aataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaacaatagaatga 147  Q
    ||||||||||||||||    ||| |||||||| | |||| ||| |||||| |||||| |||||| |||||||||  |||||||||| ||||| ||||||    
T  3215309 aataaaaaagttataatattttctgttccgtccattttctaaataatggagtgagaagttagttccattccgtcagaaaatatccacacaatggaatga 3215211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 28300843 - 28300778
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatg 101  Q
    |||||||||| || |||||||| ||||||| | ||||| ||||||| ||||||||||||||||||||    
T  28300843 aagggtaaaaatggaataaaaa-gttataatttattccattccgtcaactttccaaacaatggaatg 28300778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 260997 - 260960
Alignment:
Q  34 aaagggtaaaattgaaataaaaaagttataactcattc 71  Q
    |||||||||||||||| |||||||||||||||||||||    
T  260997 aaagggtaaaattgaattaaaaaagttataactcattc 260960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 23416447 - 23416339
Alignment:
Q  37 gggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaa 136  Q
    |||||||| || ||||||||| ||||||| |||||| ||||||  | ||||||||||||||||| || |||| ||| |  ||| | ||| |||| |||||    
T  23416447 gggtaaaaatggaataaaaaatttataacacattccattccgttcattttccaaacaatggaataagtaatttgttccgctccattgtataatacccaaa 23416348  T
Q  137 caatagaat 145  Q
    |||| ||||    
T  23416347 caatggaat 23416339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 23416653 - 23416580
Alignment:
Q  23 ttttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatgga 98  Q
    |||||||| ||||||| |||||||| ||||||||| ||||||  |||||| ||||||| |||| ||||||||||||    
T  23416653 ttttttaa-ataaaggttaaaattggaataaaaaa-ttataatacattccattccgtcaacttcccaaacaatgga 23416580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 45843818 - 45843753
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaat 100  Q
    |||||| ||| || |||||||| ||||||||||||||  ||||||  ||||||||||||| |||||    
T  45843818 aagggtgaaaatggaataaaaacgttataactcattctattccgttcactttccaaacaacggaat 45843753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 34970797 - 34970911
Alignment:
Q  33 taaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatc 132  Q
    |||||||||||| || |||||||| | |||||| | | |||||||||| ||||||||||||||||| || |||||||||| ||||||||| |||||||||    
T  34970797 taaagggtaaaaatggaataaaaagggtataacacttcccgttccgtccactttccaaacaatggagtgggaaattagttccattccgtcataaaatatc 34970896  T
Q  133 caaacaatagaatga 147  Q
    |||||||| ||||||    
T  34970897 caaacaatggaatga 34970911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 41404807 - 41404922
Alignment:
Q  22 attttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgt 121  Q
    ||||||||| |||||||||||||||| ||||||| | |||||||||||||||||||||  | |||||||||||||||||| |||||||  |  |||||||    
T  41404807 attttttaa-ataaagggtaaaattggaataaaatatttataactcattccgttccgttgattttccaaacaatggaatgggaaattaactagattccgt 41404905  T
Q  122 cgtaaaatatccaaaca 138  Q
    |||||| ||||||||||    
T  41404906 cgtaaagtatccaaaca 41404922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 48046974 - 48047097
Alignment:
Q  24 tttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcg 123  Q
    |||||||  ||||||||||||||| |||||||||||||||||   ||||||||| |  ||||||||||||||||| || |||||||||| ||||| |||     
T  48046974 tttttaaactaaagggtaaaattggaataaaaaagttataacatgttccgttccattcactttccaaacaatggagtgggaaattagttccattctgtct 48047073  T
Q  124 taaaatatccaaacaatagaatga 147  Q
    |||||| |||||||||| ||||||    
T  48047074 taaaatttccaaacaatggaatga 48047097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 49765566 - 49765661
Alignment:
Q  52 aaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaacaatagaatga 147  Q
    |||||||||||||| | |||||||||||| ||||| ||||||||||| || ||||||||||||||||| ||||||||||| |||||||| ||||||    
T  49765566 aaaaaagttataacactttccgttccgtccacttttcaaacaatggagtgggaaattagtttcattccatcgtaaaatattcaaacaatggaatga 49765661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 15582249 - 15582361
Alignment:
Q  34 aaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatcc 133  Q
    |||||||||||||| |||||||   ||||||||| ||| |||||||| ||||||||||||||||||||  ||||||||| |||||| || |||| |||||    
T  15582249 aaagggtaaaattggaataaaatttttataactctttctgttccgtcaactttccaaacaatggaatggaaaattagttccattccatcataaagtatcc 15582348  T
Q  134 aaacaatagaatg 146  Q
    ||||||| |||||    
T  15582349 aaacaatggaatg 15582361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 8099671 - 8099784
Alignment:
Q  33 taaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatc 132  Q
    |||||||||||| ||||| ||| || ||||||||||||  |||||||||| |||| |||||||||| || ||||||||||||||||||| ||  ||||||    
T  8099671 taaagggtaaaaatgaaaaaaacaa-ttataactcattttgttccgtctattttctaaacaatggagtgggaaattagtttcattccgttgtttaatatc 8099769  T
Q  133 caaacaatagaatga 147  Q
    |||||||| ||||||    
T  8099770 caaacaatggaatga 8099784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 41419074 - 41419183
Alignment:
Q  32 ataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctacttt-ccaaacaatggaatgagaaattagtttcattccgtcgtaaaata 130  Q
    |||||||||||| |||||||||||||| ||||||| |||  ||||| || | ||| ||||| |||| ||||||||||||||||||||| |||||||||||    
T  41419074 ataaagggtaaatttgaaataaaaaagatataacttattttgttccatccatttttccaaagaatgtaatgagaaattagtttcattctgtcgtaaaata 41419173  T
Q  131 tccaaacaat 140  Q
    || |||||||    
T  41419174 tcaaaacaat 41419183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 35306335 - 35306265
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaa 105  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||||| | ||||||||||||||||||||||    
T  35306335 aagggtaaaattggaataaaaaaattataactcattccattccgtcaattttccaaacaatggaatgagaa 35306265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 7521707 - 7521819
Alignment:
Q  34 aaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatcc 133  Q
    ||||||||||||||||||||| ||||||||||||||||  |||  || ||||| |||||||| |||||  ||||||| | |||||| || |||||||| |    
T  7521707 aaagggtaaaattgaaataaataagttataactcattcaattctctcgacttttcaaacaatagaatggaaaattagctccattccatcataaaatattc 7521806  T
Q  134 aaacaatagaatg 146  Q
    ||||||| |||||    
T  7521807 aaacaatggaatg 7521819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 32573691 - 32573802
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatcca 134  Q
    ||||||||||||| ||||||||||||||||||| |||||||| ||  ||||| ||||||||||||||  ||| |||||   |||| || |||| ||||||    
T  32573691 aagggtaaaattggaataaaaaagttataactcgttccgttctgttaacttttcaaacaatggaatggaaaactagttctgttccatcataaagtatcca 32573790  T
Q  135 aacaatagaatg 146  Q
    |||||| |||||    
T  32573791 aacaatggaatg 32573802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 50139006 - 50138929
Alignment:
Q  34 aaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtt 112  Q
    ||||||||| ||||||||||||| |||||||| |||||| |||| || ||||  |||||||||||||||||||||||||    
T  50139006 aaagggtaagattgaaataaaaa-gttataacacattcccttccatcgacttctcaaacaatggaatgagaaattagtt 50138929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 146
Target Start/End: Complemental strand, 2664359 - 2664249
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatcca 134  Q
    |||||||||| || ||||||| | |||||||||||| | |||||||||||||||||| |||||  ||||||||| |||  ||||| || ||||  |||||    
T  2664359 aagggtaaaaatggaataaaaga-ttataactcatttcattccgtctactttccaaataatggtttgagaaatttgttcaattccatcataaagcatcca 2664261  T
Q  135 aacaatagaatg 146  Q
    |||||| |||||    
T  2664260 aacaatggaatg 2664249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 40641432 - 40641504
Alignment:
Q  24 tttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatg 96  Q
    ||||||| || |||||||||| || |||||||||||||||| |  ||||| ||| || |||||||||||||||    
T  40641432 tttttaaaattaagggtaaaaatggaataaaaaagttataatttgttccgctccatccactttccaaacaatg 40641504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 29465585 - 29465520
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatg 101  Q
    |||||||||| || |||||||| ||||||| | ||||| || |||| ||||||||||||||||||||    
T  29465585 aagggtaaaaatggaataaaaa-gttataatttattccatttcgtcaactttccaaacaatggaatg 29465520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 47980618 - 47980675
Alignment:
Q  41 aaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaa 99  Q
    ||||| ||| ||||||||| ||||||  |||| ||||||||||||||||||||||||||    
T  47980618 aaaatggaattaaaaaagt-ataacttgttccattccgtctactttccaaacaatggaa 47980675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 50108526 - 50108489
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattcc 72  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  50108526 aagggtaaaattggaataaaaaagttataacttattcc 50108489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 23474462 - 23474509
Alignment:
Q  53 aaaaagttataactcattccgttccgtctactttccaaacaatggaatg 101  Q
    ||||| |||||| ||||||||||||||| ||||||||||||||| ||||    
T  23474462 aaaaaattataa-tcattccgttccgtccactttccaaacaatgaaatg 23474509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 45848665 - 45848597
Alignment:
Q  77 cgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaacaatagaat 145  Q
    |||| ||||| | |||||| |||| | ||| |||||||||| |||| | ||||||||||||||||||||    
T  45848665 cgtccacttttccaacaatagaataaaaaaatagtttcatttcgtcattaaatatccaaacaatagaat 45848597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 50138494 - 50138450
Alignment:
Q  103 gaaattagtttcattccgtcgtaaaatatccaaacaatagaatga 147  Q
    |||||||||| ||||||||||| ||||||||||||| | ||||||    
T  50138494 gaaattagttccattccgtcgttaaatatccaaacagtggaatga 50138450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 29644618 - 29644716
Alignment:
Q  38 ggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaa 136  Q
    |||||||||| ||||||||||||||||||||| | | |||||||||||| |||| |||||||||| |||||||||||||||  || |||||||||||||    
T  29644618 ggtaaaattggaataaaaaagttataactcatcctgctccgtctacttttcaaataatggaatgaaaaattagtttcattctctcataaaatatccaaa 29644716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 149
Target Start/End: Original strand, 7314234 - 7314345
Alignment:
Q  38 ggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaac 137  Q
    |||||||||  ||| ||||| |||||| ||||||  ||||||||  ||  ||||||||||||||| || || ||| ||||||  | |||||||||||||     
T  7314234 ggtaaaattagaatgaaaaaattataagtcattctattccgtctcattctcaaacaatggaatgacaactttgttccattccaccataaaatatccaaat 7314333  T
Q  138 aatagaatgaga 149  Q
    ||||||||||||    
T  7314334 aatagaatgaga 7314345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 13106518 - 13106622
Alignment:
Q  37 gggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaa-ttagtttcattccgtcgtaaaatatccaa 135  Q
    |||||||| ||||||||||||||||||| ||||||  || |||   |||||||||||||||||| ||||| ||  || |  |||||||| ||||||||||    
T  13106518 gggtaaaaatgaaataaaaaagttataattcattctatttcgttctctttccaaacaatggaat-agaaattttattccgctccgtcgttaaatatccaa 13106616  T
Q  136 acaata 141  Q
    ||||||    
T  13106617 acaata 13106622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 6193088 - 6193149
Alignment:
Q  32 ataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaa 94  Q
    ||||||| ||||||||||||||||||  ||||| ||||||||||||||| ||| | |||||||    
T  6193088 ataaaggttaaaattgaaataaaaaatatataa-tcattccgttccgtccactattcaaacaa 6193149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 10144760 - 10144825
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatg 101  Q
    |||||||||| || ||||||| |||||||| | ||||| ||||||| |||||||||| |||||||||    
T  10144760 aagggtaaaaatggaataaaa-agttataatttattccattccgtcaactttccaaataatggaatg 10144825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 8675 - 8574
Alignment:
Q  34 aaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatcc 133  Q
    ||||||||||||||||||||||| |||||||||||||| ||||  || ||||   |||||||||||||||||||||||| ||||||||| | ||||||||    
T  8675 aaagggtaaaattgaaataaaaa-gttataactcattctgttctatcaacttcttaaacaatggaatgagaaattagttccattccgtcattaaatatcc 8577  T
Q  134 aaa 136  Q
    |||    
T  8576 aaa 8574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 11826 - 11715
Alignment:
Q  36 agggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaa 135  Q
    ||||||||| || |||||||| ||||||| | || | |||||||  ||||||||||||||| ||||| || ||  || |  |||||||||||||| ||||    
T  11826 agggtaaaaatggaataaaaaggttataatttatgctgttccgttcactttccaaacaatgaaatgataattttattcctctccgtcgtaaaatacccaa 11727  T
Q  136 acaatagaatga 147  Q
    ||||||||||||    
T  11726 acaatagaatga 11715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 38013 - 37940
Alignment:
Q  23 ttttttaagataaagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatgga 98  Q
    |||||||| ||||||| |||||||||||||||||| ||||||  |||||| |||||||  ||||||||||||||||    
T  38013 ttttttaa-ataaaggttaaaattgaaataaaaaa-ttataatacattccattccgtcatctttccaaacaatgga 37940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 12221 - 12156
Alignment:
Q  35 aagggtaaaattgaaataaaaaagttataactcattccgttccgtctactttccaaacaatggaatg 101  Q
    |||||||||| || |||||||| ||||||| | ||||| ||||||| |||||||||| |||||||||    
T  12221 aagggtaaaaatggaataaaaa-gttataatttattccattccgtcaactttccaaataatggaatg 12156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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