View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20553_low_39 (Length: 297)

Name: NF20553_low_39
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20553_low_39
NF20553_low_39
[»] chr5 (1 HSPs)
chr5 (11-297)||(40454388-40454674)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 40454388 - 40454674
Alignment:
Q  11 gatgaaccgttaccatagtaaacctaaagaggttgatcagattgaagatcaaaatgaacacaccaatgaatttagcgatgttgtgaagcacaatgaagac 110  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  40454388 gatgaaccgttaccatagtaaacataaagaggttgatcagattgaagatcaaaatgaacacaccaatgagtttagtgatgttgtgaagcacaatgaagac 40454487  T
Q  111 aatgagagtgatgatgaagacaccaaggttgatgctaagctcaagaaacatacaagacgaaaacagagaaagaaatatagaaacctacgaaggataactt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40454488 aatgagagtgatgatgaagacaccaaggttgatgctaagctcaagaaacataaaagacgaaaacagagaaagaaatatagaaacctacgaaggataactt 40454587  T
Q  211 taactttgctgtgagttacggttggacattaaaatagttttggatgggacaaatgtggtaaaaacagagatttaaaatccgactgtt 297  Q
    |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  40454588 taactttgttgtgagttacggttagacattaaaatagttttggaagggacaaatgtggtaaaaacagagatttaaaatctgactgtt 40454674  T

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