View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20553_low_40 (Length: 296)
Name: NF20553_low_40
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 273
Target Start/End: Complemental strand, 23876981 - 23876728
Alignment:
| Q |
15 |
gaccaatcaaaacaacatgagtaagcccaatgtgaagcaatgagttgtggaaaactaggccactatatccacacttttgaaaacattatcttcaaaacaa |
114 |
Q |
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| T |
23876981 |
gaccaagcaaaacaacatgtgtaagtccaatgtgaagcaatgagttgtggaaaactaggccactatatccacacttttgaaaacaatatcttc-aaataa |
23876883 |
T |
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| Q |
115 |
aaataatattattcatagaaaaaaggagtaaaagtataattcagaaacatgaaatatctacaacaaaggaataattcaaaaagcatatagattatgttca |
214 |
Q |
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| T |
23876882 |
aaataatattattccaagaaaaaaggagtaaaagtataattcagaaacatgaaatatctacaacaatggaataactc----agcatatacattatgttca |
23876787 |
T |
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| Q |
215 |
gtaacctatgaaacacaataaaagaagcatagccgcatattttgatacaaaataagaga |
273 |
Q |
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| T |
23876786 |
gtaatctatgaaacacaataaaagaagcatagccgcatattttgatacaaaataagaga |
23876728 |
T |
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