View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20553_low_43 (Length: 260)

Name: NF20553_low_43
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20553_low_43
NF20553_low_43
[»] chr1 (7 HSPs)
chr1 (102-260)||(37701926-37702070)
chr1 (102-260)||(37664902-37665046)
chr1 (118-260)||(37683469-37683597)
chr1 (128-246)||(8134467-8134585)
chr1 (36-94)||(37664802-37664860)
chr1 (44-94)||(37674532-37674582)
chr1 (44-94)||(37702112-37702162)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 102 - 260
Target Start/End: Complemental strand, 37702070 - 37701926
Alignment:
Q  102 tttgtcaggtcaagtgtggtcggatcaattgtgatgtggttctcggccctttggtgtgtagctttgtttcgatcatgtagggaggtgctttcttatctgc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||              |||||||||| ||||| |    
T  37702070 tttgtcaggtcaagtgtggtcggatcaattgtgatgtggttctcagccctttggtgtgtagctttgtt--------------aggtgctttcatatctac 37701985  T
Q  202 ataatggtgcagcccacaatccgagaggttatcaggaagtggtggttgttgaggtttgc 260  Q
    | ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  37701984 agaatggtgcagcccacaattggagaggttatcaggaagtggtggttgttgaggtttgc 37701926  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 102 - 260
Target Start/End: Original strand, 37664902 - 37665046
Alignment:
Q  102 tttgtcaggtcaagtgtggtcggatcaattgtgatgtggttctcggccctttggtgtgtagctttgtttcgatcatgtagggaggtgctttcttatctgc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||              |||||||||| ||||| |    
T  37664902 tttgtcaggtcaagtgtggtcggatcaattgtgatgtggttctcaaccctttggtgtgtagctttgtt--------------aggtgctttcatatctac 37664987  T
Q  202 ataatggtgcagcccacaatccgagaggttatcaggaagtggtggttgttgaggtttgc 260  Q
    | |||||||||||||||| |  |||||||||||| |||||||||| |||||||||||||    
T  37664988 agaatggtgcagcccacagttggagaggttatcatgaagtggtggctgttgaggtttgc 37665046  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 260
Target Start/End: Original strand, 37683469 - 37683597
Alignment:
Q  118 tggtcggatcaattgtgatgtggttctcggccctttggtgtgtagctttgtttcgatcatgtagggaggtgctttcttatctgcataatggtgcagccca 217  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||              |||||||||| ||||| || ||||||||| ||||    
T  37683469 tggtcggatcaattgtgatgtggttctcaaccctttggtgtgtagctttgtt--------------aggtgctttcatatctacagaatggtgcaaccca 37683554  T
Q  218 caatccgagaggttatcaggaagtggtggttgttgaggtttgc 260  Q
    || |  |||| ||||||||||||| |||| |||||||||||||    
T  37683555 cagttggagaagttatcaggaagttgtggctgttgaggtttgc 37683597  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 246
Target Start/End: Complemental strand, 8134585 - 8134467
Alignment:
Q  128 aattgtgatgtggttctcggccctttggtgtgtagctttgtttcgatcatgtagggaggtgctttcttatctgcataatggtgcagcccacaatccgaga 227  Q
    |||| ||| |||||||||| ||||||| ||||||||| || |||||||||||||||||| |||||    | ||||||||||||| ||| |||||  ||||    
T  8134585 aattttgacgtggttctcgaccctttgttgtgtagctctggttcgatcatgtagggaggggcttttgcttttgcataatggtgctgcctacaattggaga 8134486  T
Q  228 ggttatcaggaagtggtgg 246  Q
    ||||   ||||||||||||    
T  8134485 ggtttctaggaagtggtgg 8134467  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 37664802 - 37664860
Alignment:
Q  36 gaggactaaatagggttggccagagatgcattggaagtgtagattctctgcatttgaat 94  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||||||||||||| ||||    
T  37664802 gaggacttaatagggttggccagagatgcattgaaagggtagattctctgcattagaat 37664860  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 37674532 - 37674582
Alignment:
Q  44 aatagggttggccagagatgcattggaagtgtagattctctgcatttgaat 94  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  37674532 aatagggttggccagagatgcattggaagggtagattctctgcattagaat 37674582  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 37702162 - 37702112
Alignment:
Q  44 aatagggttggccagagatgcattggaagtgtagattctctgcatttgaat 94  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  37702162 aatagggttggccagagatgcattggaagggtagattctctgcattagaat 37702112  T

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