View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20553_low_44 (Length: 257)
Name: NF20553_low_44
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_low_44 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 257
Target Start/End: Complemental strand, 23599352 - 23599108
Alignment:
| Q |
7 |
tcgaagaatatacaatatactcacagaacgagctaatatataactcaaacaaagtacaagaaacaaacacacgcacaatgccgaactggcagtgtataac |
106 |
Q |
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| T |
23599352 |
tcgaagaaagtacaatatactcagagaacgagctaatatataactcaaacaaagtacaagaaacaaacacacgcacaatgccgaactggcagtgtataac |
23599253 |
T |
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| Q |
107 |
attggtaactttgctgatagaactaaacaaagtgcaaaagtgatgctgatgaacaaagtgtacgtgatgctatgttctgttaactccaagtatgcataca |
206 |
Q |
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||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23599252 |
atttgtaactttgctgataaaactaaacaaagtgcgaaagtgatgctgatgaacaaagtgtacgtgatgctatgttctgttaactccaagtatgcataca |
23599153 |
T |
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| Q |
207 |
aagtcttataaatataacacattcttcttctcactctatctccattggaac |
257 |
Q |
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| T |
23599152 |
atgtct------tataatacattcttcttctcactctatctccattggaac |
23599108 |
T |
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