View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20553_low_45 (Length: 257)

Name: NF20553_low_45
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20553_low_45
NF20553_low_45
[»] chr7 (7 HSPs)
chr7 (104-257)||(9953998-9954151)
chr7 (104-257)||(23409656-23409808)
chr7 (104-257)||(30758610-30758763)
chr7 (104-257)||(25137059-25137212)
chr7 (104-254)||(7747451-7747601)
chr7 (104-257)||(42779640-42779792)
chr7 (195-257)||(23688671-23688733)
[»] chr3 (5 HSPs)
chr3 (104-257)||(11773572-11773725)
chr3 (104-257)||(27088637-27088789)
chr3 (104-257)||(559700-559854)
chr3 (144-257)||(36529788-36529902)
chr3 (144-257)||(36533231-36533345)
[»] scaffold0049 (1 HSPs)
scaffold0049 (104-254)||(38598-38748)
[»] chr2 (5 HSPs)
chr2 (104-257)||(41363025-41363178)
chr2 (104-257)||(44679818-44679968)
chr2 (118-257)||(28633817-28633955)
chr2 (120-257)||(11925687-11925824)
chr2 (105-218)||(33397966-33398079)
[»] scaffold0007 (1 HSPs)
scaffold0007 (104-257)||(275624-275776)
[»] chr4 (11 HSPs)
chr4 (104-257)||(53436997-53437150)
chr4 (104-257)||(53438430-53438583)
chr4 (104-257)||(55585037-55585190)
chr4 (104-254)||(46671232-46671381)
chr4 (104-257)||(16420217-16420369)
chr4 (104-257)||(3216154-3216307)
chr4 (104-257)||(6673498-6673651)
chr4 (104-257)||(9353070-9353223)
chr4 (124-245)||(987486-987607)
chr4 (205-257)||(9341969-9342021)
chr4 (108-236)||(42515517-42515646)
[»] scaffold0144 (1 HSPs)
scaffold0144 (104-257)||(40111-40263)
[»] scaffold0434 (1 HSPs)
scaffold0434 (104-257)||(11143-11296)
[»] chr6 (5 HSPs)
chr6 (104-257)||(35023710-35023862)
chr6 (104-257)||(2879957-2880114)
chr6 (104-257)||(28871703-28871856)
chr6 (105-257)||(33354022-33354174)
chr6 (132-252)||(20025814-20025935)
[»] chr1 (1 HSPs)
chr1 (104-257)||(36215737-36215890)
[»] scaffold0210 (2 HSPs)
scaffold0210 (104-257)||(23306-23459)
scaffold0210 (104-257)||(24310-24463)
[»] chr8 (4 HSPs)
chr8 (104-257)||(9330316-9330469)
chr8 (104-257)||(10332880-10333032)
chr8 (108-227)||(32233158-32233277)
chr8 (176-257)||(40454967-40455048)


Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 104 - 257
Target Start/End: Complemental strand, 9954151 - 9953998
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||    
9954151 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttggccgcctttaaattgatttacggtttatattgtgatac 9954052  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
9954051 ggaagttgaatttataaacgctttgagataagaaattcttgcctttgtaatcta 9953998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 23409656 - 23409808
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||| ||    
23409656 attattgaagaagtttattgaatcatttttcttatctctgttcttaatgtttttattgcttggccgcctttcaattgatttacggtttatattgtgaaac 23409755  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
     ||||||||||||||||||| |||||||||||| ||| ||||||||||||||||    
23409756 agaagttgaatttataaacg-tttgagataagagattcttgcctttgtaatcta 23409808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 30758610 - 30758763
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||||||||  |||||||||  |||||||||||||  | ||||||| |||||||| |||| |  |||||||||||||| ||||||||||||||| ||    
30758610 attattgatgaaacttattgaattgtttttcttatctccatgcttaatgcttttattgattgatcacctttaaattgatttacggtttatattgtgaaac 30758709  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
30758710 ggaagttgaatttataaacgctttgagataagaaattcttgcctttgtaatcta 30758763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 25137059 - 25137212
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||||||||  ||||||||| ||||||||||||||  | ||||||| |||||||| |||| |  |||||||||||||| ||||||||||||||| ||    
25137059 attattgatgaaacttattgaattatttttcttatctccatgcttaatgcttttattgattgatcacctttaaattgatttacggtttatattgtgaaac 25137158  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    |||||||||||||||| ||| |||||||||||||||| ||||||||||||||||    
25137159 ggaagttgaatttatatacgttttgagataagaaattcttgcctttgtaatcta 25137212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 104 - 254
Target Start/End: Original strand, 7747451 - 7747601
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||||||||  || ||||||  |||||||||||||  | ||||||| |||||||| || | |  |||||||||||||| ||||||||||||||| ||    
7747451 attattgatgaaacttcttgaattgtttttcttatctccatgcttaatgcttttattgattaatcacctttaaattgatttacggtttatattgtgaaac 7747550  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaat 254  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||    
7747551 ggaagttgaatttataaactctttgagataagaaattcttgcctttgtaat 7747601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 257
Target Start/End: Complemental strand, 42779792 - 42779640
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||||||||  |||||||||  ||||  |||||||  | ||||||  |||||||| |||| |  |||||||||||||| ||||||||||||||| ||    
42779792 attattgatgaaacttattgaattgttttaattatctccatgcttaatacttttattgattgatcacctttaaattgatttacggtttatattgtgaaac 42779693  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    | |||| |||||||||||||| ||||||||||| ||  ||||||||| ||||||    
42779692 gaaagtggaatttataaacgc-ttgagataagagatccttgcctttgcaatcta 42779640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 23688733 - 23688671
Alignment:
195 ttgtgatacggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    |||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
23688733 ttgtgaaacggaagttgaatttataaatgctttgagataagaaattcttgcctttgtaatcta 23688671  T

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Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 104 - 257
Target Start/End: Complemental strand, 11773725 - 11773572
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| ||||||||||||||||||    
11773725 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgcttttattgcttggccgcctttaaattgatttacggtttatattgtgatac 11773626  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
11773625 ggaagttgaatttataaacgctttgagataataaattcttgcctttgtaatcta 11773572  T

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Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 104 - 257
Target Start/End: Complemental strand, 27088789 - 27088637
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||  |||||||| |||| |  |||||||||||||| ||||||||||||| | ||    
27088789 attattgatgaagtttattaaatcatttttcttatctctgttcttaatacttttattgattgatcacctttaaattgatttacggtttatattgtaaaac 27088690  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    ||||||||||||||||||| | |||||||||||| ||||||||||||| |||||    
27088689 ggaagttgaatttataaacac-ttgagataagaagtttttgcctttgtgatcta 27088637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 559700 - 559854
Alignment:
104 attattgatgaagtttattgaatcatttt-tcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgata 202  Q
    ||||||||||||  |||||||||  |||| |||||||||  | ||||||| |||||||| |||| |  |||||||||||||| | | ||||||||||| |    
559700 attattgatgaaacttattgaatttttttttcttatctccatgcttaatgcttttattgattgatcacctttaaattgatttacagattatattgtgaaa 559799  T
203 cggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||    
559800 cggaagttgaatttataaacgctttgacatatgaaattcttgcctttgtaatcta 559854  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 257
Target Start/End: Original strand, 36529788 - 36529902
Alignment:
144 ttcttaatg-tttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatacggaagttgaatttataaacgctttgagataagaaatttt 242  Q
    ||||||||| ||||||||| |||| |  |||||| ||||||| |||||||| |||||| |||||||| ||||||||||||||||||| |||||| ||  |    
36529788 ttcttaatgctttttattgattgatcacctttaatttgatttacggtttatcttgtgaaacggaagtggaatttataaacgctttgaaataagagatcat 36529887  T
243 tgcctttgtaatcta 257  Q
    |||||||||||||||    
36529888 tgcctttgtaatcta 36529902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 257
Target Start/End: Original strand, 36533231 - 36533345
Alignment:
144 ttcttaatg-tttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatacggaagttgaatttataaacgctttgagataagaaatttt 242  Q
    ||||||||| ||||||||| |||| |  |||||| ||||||| |||||||| |||||| |||||||| ||||||||||||||||||| |||||| ||  |    
36533231 ttcttaatgctttttattgattgatcacctttaatttgatttacggtttatcttgtgaaacggaagtggaatttataaacgctttgaaataagagatcct 36533330  T
243 tgcctttgtaatcta 257  Q
    |||||||||||||||    
36533331 tgcctttgtaatcta 36533345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 104 - 254
Target Start/End: Complemental strand, 38748 - 38598
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||| ||| |||||||||||||| ||||||||||||||| ||    
38748 attattgatgaagtttattgaatcatttttcttatctctgttcttaaagcttttattgcttggccgcctttaaattgatttacggtttatattgtgaaac 38649  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaat 254  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
38648 ggaagttgaatttataaacgctttgagataagaaattcttgcctttgtaat 38598  T

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Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 41363025 - 41363178
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||| ||    
41363025 attattgaagaagtttattgaatcatttttcttatatcttttcttaatgcttttattgcttgaccgcctttaaattgatttacggtttatattgtgaaac 41363124  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
     |||||| ||||||||||||||||||||||||||||| ||| ||||||||||||    
41363125 agaagttaaatttataaacgctttgagataagaaattcttgactttgtaatcta 41363178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 104 - 257
Target Start/End: Complemental strand, 44679968 - 44679818
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| ||| ||| |||||||||||||| ||||   |||||||| ||    
44679968 attattgatgaagtttattgaatcatttttcttatctctgttcttaatgcttgtattgtttggccgcctttaaattgatttacggt---tattgtgaaac 44679872  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||| ||||    
44679871 ggaagttgaatttataaacgctttgagataagaaattctttcctttgtagtcta 44679818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 118 - 257
Target Start/End: Original strand, 28633817 - 28633955
Alignment:
118 ttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatacggaagttgaattta 217  Q
    ||||| ||| |||||||||||| || ||||||||| |||||||||||| ||| |||||||||||||| ||||||||||||||| ||||||||||||||||    
28633817 ttattaaattatttttcttatccctgttcttaatgcttttattgcttggccgcctttaaattgatttacggtttatattgtgaaacggaagttgaattta 28633916  T
218 taaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    ||||| | ||| ||||||| ||| ||||||||||||||||    
28633917 taaacac-ttgggataagagattcttgcctttgtaatcta 28633955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 120 - 257
Target Start/End: Complemental strand, 11925824 - 11925687
Alignment:
120 attgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatacggaagttgaatttata 219  Q
    |||||||  |||||||||||||  | ||||||| |||||||| |||| |   ||||||||||||| ||||||||||||||| || |||||||||||||||    
11925824 attgaattgtttttcttatctccatgcttaatgcttttattgattgatcacatttaaattgatttacggtttatattgtgaaactgaagttgaatttata 11925725  T
220 aacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    |||||||||| |||||||||| ||||||||||||||||    
11925724 aacgctttgatataagaaattcttgcctttgtaatcta 11925687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 33398079 - 33397966
Alignment:
105 ttattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatacg 204  Q
    |||||||||||| |||| |||| |||||| |||||| | |  ||||||||||||||| |||| || ||||||| | |||| |  || ||||||||| ||     
33398079 ttattgatgaagcttatcgaattatttttattatctttatatttaatgtttttattgattgatcgcctttaaacttatttacaattcatattgtgaaaca 33397980  T
205 gaagttgaatttat 218  Q
    || ||| |||||||    
33397979 gacgttaaatttat 33397966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 275624 - 275776
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||| ||||||||||||||| ||    
275624 attattgaagaagtttattgaatcatttttcttatctctgttcttaatgcttttattgcttggccgcctttaaattgatttacggtttatattgtgaaac 275723  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    |||||||||||||||||||| |||||||||||| ||| ||||||||||||||||    
275724 ggaagttgaatttataaacg-tttgagataagagattcttgcctttgtaatcta 275776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 53436997 - 53437150
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    |||||||| |||||||||||||||||||||||||||||| || |||||| |||||||||||| ||| |||||||||||| | ||||||||||||||| ||    
53436997 attattgaagaagtttattgaatcatttttcttatctctgttattaatgcttttattgcttggccgcctttaaattgatatacggtttatattgtgaaac 53437096  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
53437097 ggaagttgaatttataaacgctttgaaataagaaattcttgcctttgtaatcta 53437150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 53438430 - 53438583
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    |||||||| |||||||||||||||||||||||||||||| || |||||| |||||||||||| ||| |||||||||||| | ||||||||||||||| ||    
53438430 attattgaagaagtttattgaatcatttttcttatctctgttattaatgcttttattgcttggccgcctttaaattgatatacggtttatattgtgaaac 53438529  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
53438530 ggaagttgaatttataaacgctttgaaataagaaattcttgcctttgtaatcta 53438583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 104 - 257
Target Start/End: Complemental strand, 55585190 - 55585037
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| ||| ||||||||  |||| ||||||||| ||||| ||    
55585190 attattgatgaagtttattgaatcatttttcttatctatgttcttaatgcttttattgcttggccgcctttaaatatatttacggtttatactgtgaaac 55585091  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
55585090 ggaagttgaatttataaacgctttgagatgagaaattcttgcctttgtaatcta 55585037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 104 - 254
Target Start/End: Complemental strand, 46671381 - 46671232
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||||  ||||||||||||||||||||||||||||| | ||||||| |||||||||||| ||| |||||||||||||| ||||||||||||||| ||    
46671381 attattgaataagtttattgaatcatttttcttatctctgtgcttaatgcttttattgcttggccgcctttaaattgatttacggtttatattgtgaaac 46671282  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaat 254  Q
    ||||||||||||||||||||| ||||||||||||||| ||| |||||||||    
46671281 ggaagttgaatttataaacgc-ttgagataagaaattcttgtctttgtaat 46671232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 16420217 - 16420369
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    |||||||| |||||||||||||||||||||||||||| | ||||||||| | |||||||||||||| |||||||||||||| ||||||||||||||| ||    
16420217 attattgaagaagtttattgaatcatttttcttatctttgttcttaatgctattattgcttgaccgcctttaaattgatttacggtttatattgtgaaac 16420316  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    |||| ||||||||||||| || ||||||||||| ||| ||||||||||||||||    
16420317 ggaaattgaatttataaaggc-ttgagataagagattcttgcctttgtaatcta 16420369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 104 - 257
Target Start/End: Complemental strand, 3216307 - 3216154
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||||||||  ||||||||| ||||||||||||||  | ||||||| |||||||| |||| |  |||||||||||||| ||||||||||||||| ||    
3216307 attattgatgaaacttattgaattatttttcttatctccatgcttaatgcttttattgattgatcacctttaaattgatttacggtttatattgtgaaac 3216208  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||    
3216207 ggaagttgaatttataaatactttgagataagaaattcttgcctttgtaatcta 3216154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 104 - 257
Target Start/End: Complemental strand, 6673651 - 6673498
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||||||||  |||||||||  |||||||||||||  | ||||||| |||||||| |||| |  |||||||||||||| |||||||| |||||| ||    
6673651 attattgatgaaacttattgaattgtttttcttatctccatgcttaatgcttttattgattgatcacctttaaattgatttacggtttattttgtgaaac 6673552  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
6673551 ggaagttgaatttataaacgctttgagataagaaattcttgcctttgtaatcta 6673498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 104 - 257
Target Start/End: Complemental strand, 9353223 - 9353070
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||||| ||  |||||||||  |||||||||||||  | ||||||| |||||||| |||| |  |||||||||||||| ||||||||||||||| ||    
9353223 attattgattaaacttattgaattgtttttcttatctccatgcttaatgcttttattgattgatcacctttaaattgatttacggtttatattgtgaaac 9353124  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
9353123 ggaagttgaatttataaacgctttgagataagaaattcttgcctttgtaatcta 9353070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 987486 - 987607
Alignment:
124 aatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatacggaagttgaatttataaacg 223  Q
    |||||||||||||| |||| ||||||||| |||||||||||| | || ||||| |||||||  | |||||||||| | | |||||||||||||||||| |    
987486 aatcatttttcttaactctgttcttaatgcttttattgcttggctgtgtttaatttgatttatgatttatattgtaaaaaggaagttgaatttataaatg 987585  T
224 ctttgagataagaaatttttgc 245  Q
    |||| |||||||||||| ||||    
987586 ctttaagataagaaattcttgc 987607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 9342021 - 9341969
Alignment:
205 gaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
9342021 gaagttgaatttataaacgctttgagataagaaattcttgcctttgtaatcta 9341969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 236
Target Start/End: Complemental strand, 42515646 - 42515517
Alignment:
108 ttgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttatt-gcttgaccgtctttaaattgatttgcggtttatattgtgatacgga 206  Q
    ||||||||  ||| ||||| |||||||||||||   | ||||||| ||||||| |||||| | ||  | || |||||| ||||| ||||||||| ||       
42515646 ttgatgaaacttactgaattatttttcttatcttcatgcttaatgcttttattcgcttgatcatcgattaactgatttacggttcatattgtgaaacaag 42515547  T
207 agttgaatttataaacgctttgagataaga 236  Q
    |||||||||||| || ||||||||||||||    
42515546 agttgaatttatgaatgctttgagataaga 42515517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 104 - 257
Target Start/End: Complemental strand, 40263 - 40111
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||| | ||||||||||||| ||    
40263 attattgaagaagtttattgaatcatttttcttatctctgttcttaatgcttttattgcttggccgcctttaaattgatttactgtttatattgtgaaac 40164  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    ||||||||||||||||||||| ||||||||||||||| |||| |||||||||||    
40163 ggaagttgaatttataaacgc-ttgagataagaaattcttgcttttgtaatcta 40111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 11143 - 11296
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||| ||| || ||||||||||| |||||||||||| ||  |    
11143 attattgatgaagtttattgaatcatttttcttatctctgctcttaatgcttttattgcttgcccgcctctaaattgatttacggtttatattgggaatc 11242  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||||||||||    
11243 ggaagttgaatttataaacactttgagataagaaattctttcctttgtaatcta 11296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 35023710 - 35023862
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||||  ||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||| | ||||||||||||| ||    
35023710 attattgaataagtttattgaatcatttttcttatctctgttcttaatgcttttattgcttggccgcctttaaattgatttacagtttatattgtgaaac 35023809  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    |||||||||||||||||| || ||||||||||||||| ||||||||||||||||    
35023810 ggaagttgaatttataaatgc-ttgagataagaaattattgcctttgtaatcta 35023862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 2879957 - 2880114
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||| | ||||||||||||||| ||    
2879957 attattgaagaagtttattgaatcatttttcttatctctattcttaatgcttttattgcttggccgcctttaaattgatatacggtttatattgtgaaac 2880056  T
204 ggaagt----tgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
     |||||    |||||||||||||||||| |||||||||||| ||||||||||||||||    
2880057 agaagttgaatgaatttataaacgctttcagataagaaattattgcctttgtaatcta 2880114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 28871703 - 28871856
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||||||||  |||||||||  |||||||||||||  | ||||||| |||||||| |||| |  |||||||||||||| ||||||||||||||| ||    
28871703 attattgatgaaacttattgaattgtttttcttatctccatgcttaatgcttttattgattgatcacctttaaattgatttacggtttatattgtgaaac 28871802  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
28871803 ggaagttgaatttataaacgctttgagataagaaattcttgcctttgtaatcta 28871856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 105 - 257
Target Start/End: Original strand, 33354022 - 33354174
Alignment:
105 ttattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatacg 204  Q
    |||||||||||  ||||||||| ||||||||||||||  | ||||||| |||||||| |||| |  |||||||||||||| ||||||||||||||| |||    
33354022 ttattgatgaaacttattgaattatttttcttatctccatgcttaatgcttttattgattgatcacctttaaattgatttacggtttatattgtgaaacg 33354121  T
205 gaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    |  || |||||||||||||||||||||||||||||| ||||||||||||||||    
33354122 ggggtggaatttataaacgctttgagataagaaattcttgcctttgtaatcta 33354174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 252
Target Start/End: Original strand, 20025814 - 20025935
Alignment:
132 ttcttatctcttttcttaatgtttttattgcttgaccgtcttta--aattgatttgcggtttatattgtgatacggaagttgaatttataaacgctttga 229  Q
    ||||||||||  ||||||||| |||||| | |||||| | | ||  ||||||||   ||||||||||||||  |  ||||| ||||||||||||||| ||    
20025814 ttcttatctcagttcttaatgcttttatcgtttgaccatatatataaattgattcatggtttatattgtgaatcaaaagtttaatttataaacgctt-ga 20025912  T
230 gataagaaatttttgcctttgta 252  Q
    ||||||||||| |||||||||||    
20025913 gataagaaattattgcctttgta 20025935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 36215737 - 36215890
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||||||||  |||||||||  |||||||||||||  | ||||||| |||||||| |||| |  |||||||||||||| ||||||||||||||| ||    
36215737 attattgatgaaacttattgaattgtttttcttatctccatgcttaatgcttttattgattgatcacctttaaattgatttacggtttatattgtgaaac 36215836  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
36215837 ggaagttgaatttataaacgctttgagataagaaattcttgcctttgtaatcta 36215890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 104 - 257
Target Start/End: Complemental strand, 23459 - 23306
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||||||||  |||||||||  |||||||||||||  | ||||||| |||||||| |||| | ||||||||||||||| |||||||| |||||| |     
23459 attattgatgaaacttattgaattgtttttcttatctccatgcttaatgcttttattgattgatcatctttaaattgatttacggtttattttgtgaaat 23360  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
23359 tgaagttgaatttataaacgctttgagataagaaattcttgcctttgtaatcta 23306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 104 - 257
Target Start/End: Complemental strand, 24463 - 24310
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||||||||  |||||||||  |||||||||||||  | ||||||| |||||||| |||| | ||||||||||||||| |||||||| |||||| |     
24463 attattgatgaaacttattgaattgtttttcttatctccatgcttaatgcttttattgattgatcatctttaaattgatttacggtttattttgtgaaat 24364  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
24363 tgaagttgaatttataaacgctttgagataagaaattcttgcctttgtaatcta 24310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 9330316 - 9330469
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||| ||||  |||||||||  |||||||||||||  | ||||||| |||||||| |||| |  |||||||||||||| ||||||||||||||| ||    
9330316 attattgctgaaacttattgaattgtttttcttatctccatgcttaatgcttttattgattgatcacctttaaattgatttacggtttatattgtgaaac 9330415  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
9330416 ggaagttgaatttataaacgcttcgagataagaaattcttgcctttgtaatcta 9330469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 10332880 - 10333032
Alignment:
104 attattgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatac 203  Q
    ||||||||||||  |||||||||  |||||||||||||  | ||||||| |||||||| ||||    |||||||||||||| ||||||||||||||| ||    
10332880 attattgatgaaacttattgaatt-tttttcttatctccatgcttaatgcttttattgattgataacctttaaattgatttacggtttatattgtgaaac 10332978  T
204 ggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
10332979 agaagttgaatttataaacgctttgagataagaaattcttgcctttgtaatcta 10333032  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 32233158 - 32233277
Alignment:
108 ttgatgaagtttattgaatcatttttcttatctcttttcttaatgtttttattgcttgaccgtctttaaattgatttgcggtttatattgtgatacggaa 207  Q
    |||| |||| ||||||||| |||||||||||||||   || ||||| ||||||||||||||||||||||| |||||||  ||||||||| ||| ||  ||    
32233158 ttgaagaagcttattgaatgatttttcttatctctgagctaaatgtatttattgcttgaccgtctttaaactgatttgtagtttatattatgaaacataa 32233257  T
208 gttgaatttataaacgcttt 227  Q
    ||||||||||||||| ||||    
32233258 gttgaatttataaacacttt 32233277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 40454967 - 40455048
Alignment:
176 aattgatttgcggtttatattgtgatacggaagttgaatttataaacgctttgagataagaaatttttgcctttgtaatcta 257  Q
    ||||||||| ||||||||||||| | ||  ||||||||||||| ||||||||||||||| ||||| ||||||||||| ||||    
40454967 aattgatttacggtttatattgttaaacataagttgaatttatgaacgctttgagataaaaaattattgcctttgtagtcta 40455048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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