View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20553_low_48 (Length: 250)
Name: NF20553_low_48
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_low_48 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 26836416 - 26836172
Alignment:
| Q |
6 |
agcagcagagatcatagcgaaaacaagttttggcatggaaggcgaaaatgctagagaggtgcttcacaaattaagagctttacaaatgactctctttaaa |
105 |
Q |
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| T |
26836416 |
agcaggagagatcatagcgaaaacaagttttggcatggaaggcgaaaatgctagagaggtgcttcacaaattaagagctttacaaatgactctcttcaaa |
26836317 |
T |
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| Q |
106 |
accaataggcatgtaggtgttccctttggcaagtattttaatgtcaagaaaaatctagtggctaaaaaacttggcaaagaaatcgacagaatcttgttgt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26836316 |
accaataggcatgtaggtgttccctttggcaagtattttaatgtcaagaaaaatctagtggctaaaaaacttggcaaagaaatcgacaaaatcttgttgt |
26836217 |
T |
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| Q |
206 |
ctatagtcgaagctcgaaagaagtcactcaaaaacaattctaaac |
250 |
Q |
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| T |
26836216 |
ctatagtcgaagctcgaaagaagtcactcaaaaacaattctaaac |
26836172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 246
Target Start/End: Complemental strand, 45421349 - 45421109
Alignment:
| Q |
6 |
agcagcagagatcatagcgaaaacaagttttggcatggaaggcgaaaatgctagagaggtgcttcacaaattaagagctttacaaatgactctctttaaa |
105 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45421349 |
agcaggagagatcatagcgaaaacaagttttggcatggaagatgaaaatgctagagaggtgcttcacaaattaagaactttacaaatgactctctttaac |
45421250 |
T |
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| Q |
106 |
accaataggcatgtaggtgttccctttggcaagtattttaatgtcaagaaaaatctagtggctaaaaaacttggcaaagaaatcgacagaatcttgttgt |
205 |
Q |
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| T |
45421249 |
tccaataggtatgtaggtgttccctttggcaagtattttaatgtcaagaaaaatctagaggctgaaaaacttggcaaagaaatcgacagaatcttgttgt |
45421150 |
T |
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| Q |
206 |
ctatagtcgaagctcgaaagaagtcactcaaaaacaattct |
246 |
Q |
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| T |
45421149 |
ctattgtcgaagctcgaaagaagtcactgaaaaacaattct |
45421109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 45412243 - 45412036
Alignment:
| Q |
12 |
agagatcatagcgaaaacaagttttggcatggaaggcgaaaatgctagagaggtgcttcacaaattaagagctttacaaatgactctctttaaaaccaat |
111 |
Q |
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|||||||||||| |||||||||||||| ||| | |||||||||| ||||||| || ||||||||||||| |||||||||||||||||||| |||||| |
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| T |
45412243 |
agagatcatagcaaaaacaagttttggtgcggaggatgaaaatgctaaagaggtgtttgacaaattaagagccttacaaatgactctctttaacaccaat |
45412144 |
T |
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| Q |
112 |
aggcatgtaggtgttccctttggcaagtattttaatgtcaagaaaaatctagtggctaaaaaacttggcaaagaaatcgacagaatcttgttgtctatag |
211 |
Q |
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| T |
45412143 |
cgatatgtaggagttccctttggcaagtactttaatgtcaagaaaaacttagaggccaaaaaacttggcaaagaaatcgacaaactcttattgtcaattg |
45412044 |
T |
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| Q |
212 |
tcgaagct |
219 |
Q |
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| T |
45412043 |
tagaagct |
45412036 |
T |
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