View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20553_low_49 (Length: 247)
Name: NF20553_low_49
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_low_49 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 11603847 - 11604083
Alignment:
| Q |
1 |
ccaaaggtgcatcctgcaagtctagtacattgagaaattgaacaccattggaggagcataattcatgaagagaaaactgattgagtaaatctgataatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11603847 |
ccaaaggtgcatcctgcaagtctagtacattgagaaattgaacaccattggaggagcataattcatgaagagaaaactgattgagtaaatctgataatcc |
11603946 |
T |
|
| Q |
101 |
aaacattagcagagacctaagatgaaatgtagtcgtattttgttgtaatacattatgcgaaggatttatgaccgataaacgtcgaactcgctcaggccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11603947 |
aaacattagcagagacctaagatgaaatgtagtcgtattttgttgtaatacattatgcgaaggatttatgaccgataaacgtcgaactcgctcaggccat |
11604046 |
T |
|
| Q |
201 |
accatatcttgttctttaactattgttgcaaagttct |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11604047 |
accatatcttgttctttaactattgttgcaaagttct |
11604083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 11642108 - 11641872
Alignment:
| Q |
1 |
ccaaaggtgcatcctgcaagtctagtacattgagaaattgaacaccattggaggagcataattcatgaagagaaaactgattgagtaaatctgataatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | ||||||| ||||||||||||||||||| | |||||| ||||||| | ||||||||| | | |
|
|
| T |
11642108 |
ccaaaggtgcatcctgcaagtctagtacattgagcaacttaacaccagtggaggagcataattcatggatagaaaaatgattgactgaatctgatattgc |
11642009 |
T |
|
| Q |
101 |
aaacattagcagagacctaagatgaaatgtagtcgtattttgttgtaatacattatgcgaaggatttatgaccgataaacgtcgaactcgctcaggccat |
200 |
Q |
| |
|
||||||||||||||||||||| | ||| | ||| |||| |||| | ||||||||| || | |||||||||||||||||| |||||||| || |||||| |
|
|
| T |
11642008 |
aaacattagcagagacctaagtttgaatatggtcttattctgtttaagtacattatgtgatgaatttatgaccgataaacgacgaactcgttccggccat |
11641909 |
T |
|
| Q |
201 |
accatatcttgttctttaactattgttgcaaagttct |
237 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
11641908 |
accatatcttgttctttggctactgttgcaaagttct |
11641872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 11623602 - 11623366
Alignment:
| Q |
1 |
ccaaaggtgcatcctgcaagtctagtacattgagaaattgaacaccattggaggagcataattcatgaagagaaaactgattgagtaaatctgataatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | ||||||| ||||||||||||||||||| | |||||| ||||||| | ||||||||| | | |
|
|
| T |
11623602 |
ccaaaggtgcatcctgcaagtctagtacattgagcaacttaacaccagtggaggagcataattcatggatagaaaaatgattgactgaatctgatattgc |
11623503 |
T |
|
| Q |
101 |
aaacattagcagagacctaagatgaaatgtagtcgtattttgttgtaatacattatgcgaaggatttatgaccgataaacgtcgaactcgctcaggccat |
200 |
Q |
| |
|
||||||||||||||||||||| | ||| | ||| | || |||| ||||||||| || | ||||||||| |||||||| |||||||| || |||||| |
|
|
| T |
11623502 |
aaacattagcagagacctaagtttgaatatggtcttgttctgtttatgtacattatgtgacgaatttatgactgataaacgacgaactcgttccggccat |
11623403 |
T |
|
| Q |
201 |
accatatcttgttctttaactattgttgcaaagttct |
237 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
11623402 |
accatatcttgttctttggctactgttgcaaagttct |
11623366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University