View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20553_low_5 (Length: 522)
Name: NF20553_low_5
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 2 - 510
Target Start/End: Original strand, 1154915 - 1155401
Alignment:
| Q |
2 |
cagtaaatatcaaatcatcaacatacaaacttacatgtagaatcttacctccagcgcctgtcatgagaaacaaagtgtgttcacgcgagcatgtttcaaa |
101 |
Q |
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| T |
1154915 |
cagtaaatatcaaatcatcaacatacaaacttacaattagaatcttacctccagcacctgtcatgagaaacaaagtgtgttcacgcgagcatgtttcaaa |
1155014 |
T |
|
| Q |
102 |
gccttcttttagaaaatacgattctatacgaatgtaccatgctcgtggagcttgtttcagtccatacttggagcttgttcagtccatgaagtgtattctt |
201 |
Q |
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| T |
1155015 |
gccttctttcagaaaatacgattctatacgaatgtaccatgctcgtggagcttgtttcagtcca----------------------tgaagtgtattctt |
1155092 |
T |
|
| Q |
202 |
caacttatacaccttatgcccattgccgttaatttcatatccgcaaggctgttccacaaacacttattcattgagtagaccatgcaaaaatgctgaattt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1155093 |
caacttatacaccttatgcccattgccgttaatttcatatccgcaaggctgttccacaaacacttattcattgagtagaccatgcaaaaatgctgaattt |
1155192 |
T |
|
| Q |
302 |
acatccaattgatagatttacaccccctttgagtagtaaccgcaagcttttgtcgagttgtatctaatcttgctgccggtgtgaagacttcatagtaatt |
401 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1155193 |
acatccaattgatagatttacatcccctttgagtagtaactgcaagcattagtcgagttgtatctaatcttgctgccggtgtgaagacttcatagtaatc |
1155292 |
T |
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| Q |
402 |
gacaccatgttgttgagcatatcttttttccacaagtcttgctttgtatttatctatttctccattctcattgagctttgttttgaatatccatttcact |
501 |
Q |
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| T |
1155293 |
gaaaccatgttgttgagcatatcttttttccacaagtcttgctttgtatttatctatttctccattctcattgagctttgttttgaatatccatttcact |
1155392 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 485
Target Start/End: Complemental strand, 11850181 - 11850127
Alignment:
| Q |
431 |
ccacaagtcttgctttgtatttatctatttctccattctcattgagctttgtttt |
485 |
Q |
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|||| ||||| || ||||| |||||||| |||||||||||||||||||| ||||| |
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| T |
11850181 |
ccactagtctcgccttgtacttatctatctctccattctcattgagcttagtttt |
11850127 |
T |
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