View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20553_low_53 (Length: 239)
Name: NF20553_low_53
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_low_53 |
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| [»] chr6 (2 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 26835929 - 26836149
Alignment:
| Q |
19 |
cagcaagcatcgtgatatcaaactcattgtttcccacaacttctttaatctcttctcttaattgattttgccaatcttcatgtgtggcaagaagcaacaa |
118 |
Q |
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| T |
26835929 |
cagcaagcatcgtgatatcaaactcattgtttcccacaacttctttaatctcttctcttaattgattttgccaatcttcatgtgtggcaagaagcaacaa |
26836028 |
T |
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| Q |
119 |
agtccatgtgatagcaagtgctgttgtttcatgtccaccaaagaagaaagttttgcattcatcaactacttctcgtgttgttaatgtctttgcagattgg |
218 |
Q |
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| T |
26836029 |
agtccatgtgatagcaagtgctgttgtttcatgtccaccaaagaagaaagttttgcattcatcaactacttctcgtgttgttaatgtctttgcagattgg |
26836128 |
T |
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| Q |
219 |
ctaacatcactattttctttt |
239 |
Q |
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| T |
26836129 |
ctaacatcactattttctttt |
26836149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 6973227 - 6973181
Alignment:
| Q |
135 |
agtgctgttgtttcatgtccaccaaagaagaaagttttgcattcatc |
181 |
Q |
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| T |
6973227 |
agtgcagttgtttcatgtccagcaaagaagaatgttttgcattcatc |
6973181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 45420862 - 45421082
Alignment:
| Q |
19 |
cagcaagcatcgtgatatcaaactcattgtttcccacaacttctttaatctcttctcttaattgattttgccaatcttcatgtgtggcaagaagcaacaa |
118 |
Q |
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| T |
45420862 |
cagcaagcatcgtgacatcaaactcattgtttcccacaacttctttaatctcttctcttaattgattttgccaatcttcatgtgtagcaagaagcaacaa |
45420961 |
T |
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| Q |
119 |
agtccatgtgatagcaagtgctgttgtttcatgtccaccaaagaagaaagttttgcattcatcaactacttctcgtgttgttaatgtctttgcagattgg |
218 |
Q |
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| T |
45420962 |
agtccatgtgatagcaagtgctgttgtttcatgtccaccaaagaagaaagttttgcattcatcaactacttctcgtgttgttaatgtctttgcagattgg |
45421061 |
T |
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| Q |
219 |
ctaacatcactattttctttt |
239 |
Q |
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| T |
45421062 |
ctaacatcactattttctttt |
45421082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 45411766 - 45411952
Alignment:
| Q |
23 |
aagcatcgtgatatcaaactcattgtttcccacaacttctttaatctcttctcttaattgattttgccaatcttcatgtgtggcaagaagcaacaaagtc |
122 |
Q |
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| T |
45411766 |
aagcatagtgatatcaagctcattgtttcccacaacttctttaatctcttctcttaattgattttgccaatcttcatgtgtagcaagaagcaacaaagtc |
45411865 |
T |
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| Q |
123 |
catgtgatagcaagtgctgttgtttcatgtccaccaaagaagaaagttttgcattcatcaactacttctcgtgttgttaatgtcttt |
209 |
Q |
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| T |
45411866 |
catgtgatagcaagtgctgttgtttcatgtccaccaaagaagaaagtcttgcattcatcaactacttctcttgatgtaagtgtcttt |
45411952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 181
Target Start/End: Original strand, 29801095 - 29801219
Alignment:
| Q |
57 |
acttctttaatctcttctcttaattgattttgccaatcttcatgtgtggcaagaagcaacaaagtccatgtgatagcaagtgctgttgtttcatgtccac |
156 |
Q |
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| T |
29801095 |
acttctcttatctcatctctcaattgattttgccaatctttatgcatagctaaaagcatcaaagtccaagaaatagccaatgctgttgtctcatgaccac |
29801194 |
T |
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| Q |
157 |
caaagaagaaagttttgcattcatc |
181 |
Q |
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| T |
29801195 |
caatgaaaaaggtcttgcactcatc |
29801219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 184
Target Start/End: Original strand, 64449 - 64579
Alignment:
| Q |
54 |
acaacttctttaatctcttctcttaattgattttgccaatcttcatgtgtggcaagaagcaacaaagtccatgtgatagcaagtgctgttgtttcatgtc |
153 |
Q |
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| T |
64449 |
acaacttctttaatttcatctctcaattggttttgccaatcttcatgcaaagctagaagcagcaaagtccatgtgattgaaagtgatgtggtctcatatc |
64548 |
T |
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| Q |
154 |
caccaaagaagaaagttttgcattcatcaac |
184 |
Q |
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| T |
64549 |
caccaaagaaaaatgtcttgcactcatcaac |
64579 |
T |
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