View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20553_low_55 (Length: 237)

Name: NF20553_low_55
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20553_low_55
NF20553_low_55
[»] chr7 (9 HSPs)
chr7 (84-221)||(22248145-22248282)
chr7 (1-80)||(9953568-9953647)
chr7 (4-80)||(23688245-23688321)
chr7 (1-80)||(42779212-42779289)
chr7 (1-80)||(30759114-30759193)
chr7 (1-80)||(23410160-23410240)
chr7 (1-80)||(25138134-25138213)
chr7 (7-72)||(7747961-7748026)
chr7 (161-217)||(22248439-22248495)
[»] chr3 (7 HSPs)
chr3 (81-221)||(3298010-3298150)
chr3 (1-80)||(12678425-12678504)
chr3 (16-80)||(11773143-11773207)
chr3 (1-72)||(21222125-21222196)
chr3 (1-72)||(36530252-36530322)
chr3 (1-72)||(36533695-36533765)
chr3 (7-80)||(27088211-27088284)
[»] chr2 (5 HSPs)
chr2 (1-81)||(28634296-28634376)
chr2 (1-80)||(11925256-11925335)
chr2 (1-80)||(41363530-41363609)
chr2 (1-72)||(44679394-44679465)
chr2 (1-73)||(7885409-7885481)
[»] chr6 (6 HSPs)
chr6 (1-80)||(35024214-35024293)
chr6 (1-80)||(2868005-2868084)
chr6 (1-80)||(2880464-2880543)
chr6 (1-80)||(33354526-33354605)
chr6 (31-80)||(20026653-20026702)
chr6 (27-64)||(31472676-31472713)
[»] chr4 (10 HSPs)
chr4 (1-81)||(55584607-55584687)
chr4 (1-72)||(46670806-46670877)
chr4 (1-80)||(53437500-53437579)
chr4 (1-80)||(53438933-53439012)
chr4 (1-82)||(9341537-9341618)
chr4 (1-80)||(9352640-9352719)
chr4 (4-82)||(6673065-6673143)
chr4 (7-72)||(42515087-42515152)
chr4 (1-80)||(16420722-16420800)
chr4 (22-59)||(987983-988020)
[»] scaffold0144 (1 HSPs)
scaffold0144 (1-80)||(39682-39761)
[»] scaffold0049 (1 HSPs)
scaffold0049 (1-80)||(38164-38243)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-72)||(276123-276194)
[»] chr5 (1 HSPs)
chr5 (1-80)||(41586436-41586515)
[»] chr8 (8 HSPs)
chr8 (1-81)||(9330821-9330901)
chr8 (1-80)||(10333383-10333462)
chr8 (1-56)||(12104124-12104179)
chr8 (16-78)||(14647317-14647379)
chr8 (16-72)||(40455419-40455475)
chr8 (5-72)||(10236509-10236576)
chr8 (11-72)||(14641700-14641761)
chr8 (11-72)||(14664015-14664076)
[»] scaffold0434 (1 HSPs)
scaffold0434 (1-80)||(11647-11726)
[»] scaffold0210 (1 HSPs)
scaffold0210 (1-77)||(22878-22954)
[»] chr1 (2 HSPs)
chr1 (1-80)||(35765125-35765204)
chr1 (1-71)||(36216241-36216311)


Alignment Details
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 84 - 221
Target Start/End: Complemental strand, 22248282 - 22248145
Alignment:
Q  84 accaaattattttttaatgcatattgatttgttaaccaaaataaaaatctcagaacttctctaccgaactgataggtcatcaaatgtagtgcttatgctg 183  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  22248282 accaaaatattttttaatgcatattaatttgttaaccaaaataaaaatctcagaacttctctaccgaactgataggtcatcaaatgcagtgcttatactg 22248183  T
Q  184 cattggcatagactaggcagaacacttactaagaatga 221  Q
    | ||||||||||||||||||||||||||||||||||||    
T  22248182 ccttggcatagactaggcagaacacttactaagaatga 22248145  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 9953647 - 9953568
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9953647 atcctcgagttcgacactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaatcgctatca 9953568  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 23688321 - 23688245
Alignment:
Q  4 cttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||    
T  23688321 cttgagtttgacactcggtcttaccgttttaaatttactacttgaacgatttcgtacacttgcgaaaatcgctatca 23688245  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 42779289 - 42779212
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||| ||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||    
T  42779289 atcctcgagttcgatactcggtcttaccgttttaatt--actacttgcacgatttcgtacacttgcgaaaattgccatca 42779212  T

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Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 30759114 - 30759193
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||  |||||||    
T  30759114 atccttgagttcgacactcggtcttaccgttttaaatttactacttgaacgatttcgtacacttgcgaaaaccgctatca 30759193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 23410160 - 23410240
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacga-tttcgtacacttgcgaaaattgctatca 80  Q
    ||||| ||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||    
T  23410160 atcctcgagttcgacactcggtcttaccgttttaattttactacttgcacgattttcgtacacttgtgaaaatcgctatca 23410240  T

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Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 25138134 - 25138213
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||| ||||| || ||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  25138134 atcctcgagttcgacactcgatcttaccgttttaattttactacttacacgatttcgtacacttacgaaaatcgctatca 25138213  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 7747961 - 7748026
Alignment:
Q  7 gagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaat 72  Q
    ||||| || |||||||||||||| |||||||||||||||||||| |||||||  ||||||||||||    
T  7747961 gagttcgacactcggtcttaccgatttaattttactacttgcacaatttcgttaacttgcgaaaat 7748026  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 22248495 - 22248439
Alignment:
Q  161 catcaaatgtagtgcttatgctgcattggcatagactaggcagaacacttactaaga 217  Q
    ||||||||| ||||||||| |||| |||| | ||||||| || ||||||||||||||    
T  22248495 catcaaatgcagtgcttatactgccttggtagagactagccataacacttactaaga 22248439  T

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Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 81 - 221
Target Start/End: Complemental strand, 3298150 - 3298010
Alignment:
Q  81 ttaaccaaattattttttaatgcatattgatttgttaaccaaaataaaaatctcagaacttctctaccgaactgataggtcatcaaatgtagtgcttatg 180  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||     
T  3298150 ttaaccaaaatattttttaatgcatattgatttgttaaccaaaataaaaatctcagaacttctctaccaaactgataggtcatcaaatgcagtacttata 3298051  T
Q  181 ctgcattggcatagactaggcagaacacttactaagaatga 221  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  3298050 ctgccttggcagagactaggcagaacacttactaagaatga 3298010  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 12678504 - 12678425
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12678504 atcctcgagttcgacactcgatcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaatcgctatca 12678425  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 11773207 - 11773143
Alignment:
Q  16 actcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  11773207 actcggtcttaccgttttaattttactacttgcatgatttcgtacacttgcgaaaatcgctatca 11773143  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 21222125 - 21222196
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaat 72  Q
    ||||||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  21222125 atccttgagttcgacactcgatcttaccgttttaaatttactacttgaacgatttcgtacacttgcgaaaat 21222196  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 36530252 - 36530322
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaat 72  Q
    ||||| ||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36530252 atcctcgagttcgacactcggtcttaccgtttta-ttttactacttgcacgatttcgtacacttgcgaaaat 36530322  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 36533695 - 36533765
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaat 72  Q
    ||||| ||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36533695 atcctcgagttcgacactcggtcttaccgtttta-ttttactacttgcacgatttcgtacacttgcgaaaat 36533765  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 27088284 - 27088211
Alignment:
Q  7 gagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    |||||||| |||  ||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||    
T  27088284 gagtttgacactgtgtcttaccgttttaattttactacttgcacgatttcgtacagtagcgaaaatcgctatca 27088211  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 28634296 - 28634376
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatcat 81  Q
    ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28634296 atcctcgagttcgacactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaatcgctatcat 28634376  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 11925335 - 11925256
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||    
T  11925335 atccttgagttcgacactcggtcttaccgttttaaatttactacttgaacgatttcgtacacttgcgaaaatcgctatca 11925256  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 41363530 - 41363609
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41363530 atcctcgagttcgacactcgatcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaatcgctatca 41363609  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 44679465 - 44679394
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaat 72  Q
    ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44679465 atcctcgagttcgacactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaat 44679394  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 7885481 - 7885409
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaatt 73  Q
    |||||||||||  | ||||  ||||||||||||||||||||||||| ||||||   |||||||||| ||||||    
T  7885481 atccttgagttcaacactcaatcttaccgttttaattttactacttacacgatcatgtacacttgcaaaaatt 7885409  T

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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 35024214 - 35024293
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35024214 atcctcgagttcgacactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaatcgctatca 35024293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 2868005 - 2868084
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||| ||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2868005 atcctcgagttcgacacttggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaatcgctatca 2868084  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 2880464 - 2880543
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  2880464 atcctcgagttcgacactcggtcttaccgttttaattttactacttgcacgatttcgtacactggcgaaaatcgctatca 2880543  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 33354526 - 33354605
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  33354526 atcctcgagttcgacactcggtcttaccgttttaattttattacttgcacgatttcgtacacttgcgaaaatcgctatca 33354605  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 20026653 - 20026702
Alignment:
Q  31 tttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||| ||||||||||| |||||||||||||||||  ||||| |||||||    
T  20026653 tttaaatttactacttgtacgatttcgtacacttgtaaaaatcgctatca 20026702  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 31472713 - 31472676
Alignment:
Q  27 ccgttttaattttactacttgcacgatttcgtacactt 64  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  31472713 ccgttttaactttactaattgcacgatttcgtacactt 31472676  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 55584687 - 55584607
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatcat 81  Q
    ||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  55584687 atcctcgagttcgacactcgttcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaatcgctatcat 55584607  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 46670877 - 46670806
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaat 72  Q
    ||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46670877 atcctcgagtttaatactcgatcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaat 46670806  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 53437500 - 53437579
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||| ||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  53437500 atcctcgagttcgacactcggtcttaccgttttaattttactacttgcacgattttgtacacttgcgaaaatcgctatca 53437579  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 53438933 - 53439012
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||| ||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  53438933 atcctcgagttcgacactcggtcttaccgttttaattttactacttgcacgattttgtacacttgcgaaaatcgctatca 53439012  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 9341618 - 9341537
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatcatt 82  Q
    ||||||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||  |||||||||    
T  9341618 atccttgagttcgacactcggtcttaccgttttaaatttactacttgaacgatttcgtacacttgcgaaaaccgctatcatt 9341537  T

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Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 9352719 - 9352640
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||  |||||||    
T  9352719 atccttgagttcgacactcggtcttaccgttttaaatttactacttgaacgatttcgtacacttgcgaaaaccgctatca 9352640  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 6673143 - 6673065
Alignment:
Q  4 cttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatcatt 82  Q
    |||||||| || ||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||| |||||||||    
T  6673143 cttgagttcgacactcggtcttaacgtttaaaatttactacttgaacgatttcgtacacttgcgaaaatcgctatcatt 6673065  T

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Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 42515152 - 42515087
Alignment:
Q  7 gagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaat 72  Q
    ||||| || |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42515152 gagttcgagactcagtcttaccgttttaattttactacttgcacgatttcatacacttgcgaaaat 42515087  T

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Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 16420722 - 16420800
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||| ||||| || ||||||||||||||||| ||||| |||||||| ||||||| |||||||||||||||| |||||||    
T  16420722 atcctcgagttcgacactcggtcttaccgtttaaattt-actacttgaacgattttgtacacttgcgaaaatcgctatca 16420800  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 987983 - 988020
Alignment:
Q  22 tcttaccgttttaattttactacttgcacgatttcgta 59  Q
    |||||||||||||||||||||||||  |||||||||||    
T  987983 tcttaccgttttaattttactacttatacgatttcgta 988020  T

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Target: scaffold0144 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 39761 - 39682
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  39761 atcctcgagttcgacactcggtcttaccgttttaattttactacttgcacgatttcgtacatttgcgaaaatcgctatca 39682  T

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Target: scaffold0049 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 38243 - 38164
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||    
T  38243 atccttgagttcgacactcggtcttaccgttttaaatttactacttgaacgatttcgtacacttgcgaaaatcgctatca 38164  T

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Target: scaffold0007 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 276123 - 276194
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaat 72  Q
    ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  276123 atcctcgagttcgaaactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaat 276194  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 41586436 - 41586515
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  41586436 atcctcgagttcgacactcggtcttaccgttttaattttactacttgcacgatttcttacacttgcgaaaatcgctatca 41586515  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 9330821 - 9330901
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatcat 81  Q
    ||||||||||| || ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||    
T  9330821 atccttgagttcgacactcgctcttaccgttttaaatttactacttgaacgatttcgtacacttgcgaaaatcgctatcat 9330901  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 10333383 - 10333462
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||  |||||||    
T  10333383 atccttgagttcgacactcggtcttaccgttttaaatttactacttgaacgatttcgtacacttgcgaaaaccgctatca 10333462  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12104124 - 12104179
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttc 56  Q
    ||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  12104124 atcctcgagtttgatactcggtcttaccattttaattttactaattgcacgatttc 12104179  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 14647379 - 14647317
Alignment:
Q  16 actcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctat 78  Q
    ||||||| ||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||    
T  14647379 actcggttttaccattttaattttactactttcatgatttcgaacacttgcgaaaattgctat 14647317  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 40455419 - 40455475
Alignment:
Q  16 actcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaat 72  Q
    |||| |||| ||||||||||||||||| |||||| |||||| ||||||||| |||||    
T  40455419 actcagtctcaccgttttaattttactgcttgcatgatttcatacacttgcaaaaat 40455475  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 10236509 - 10236576
Alignment:
Q  5 ttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaat 72  Q
    |||||||||| | | |||||||| ||||||||||||  ||||| || |||||||||||||| ||||||    
T  10236509 ttgagtttgacatttggtcttactgttttaattttataacttgtacaatttcgtacacttgtgaaaat 10236576  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 14641761 - 14641700
Alignment:
Q  11 ttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaat 72  Q
    |||| ||||||||||||| |||||||||||||| || ||| |||| | |||||| |||||||    
T  14641761 ttgacactcggtcttaccattttaattttactattttcacaattttgaacacttacgaaaat 14641700  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 14664015 - 14664076
Alignment:
Q  11 ttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaat 72  Q
    |||| |||| |||||| | |||||||||||||| || |||||||||| |||||| |||||||    
T  14664015 ttgacactcagtcttatcattttaattttactattttcacgatttcgaacacttacgaaaat 14664076  T

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Target: scaffold0434 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 11647 - 11726
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    ||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  11647 atcctcgagttcgacactcgatcttaccgttttaattttactacttgcacgatttcgtacacttacgaaaatcgctatca 11726  T

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Target: scaffold0210 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 22954 - 22878
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgcta 77  Q
    ||||| ||||| || ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22954 atcctcgagttcgacactcgatcttactgttttaattttactacttgcacgatttcgtacacttgcgaaaatcgcta 22878  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 35765204 - 35765125
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaattgctatca 80  Q
    |||||||| || || |||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||| |||||||    
T  35765204 atccttgaattcgacactcggtcttaccgttttaagtttaccacttgcccgatttcgtacacttgcgaaaatcgctatca 35765125  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 36216241 - 36216311
Alignment:
Q  1 atccttgagtttgatactcggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaa 71  Q
    ||||||||||| || ||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||    
T  36216241 atccttgagttcgacactcggtattaccgttttaaatttactacttgaacgatttcgtacacttgcgaaaa 36216311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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