View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20553_low_58 (Length: 230)

Name: NF20553_low_58
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20553_low_58
NF20553_low_58
[»] chr5 (4 HSPs)
chr5 (20-213)||(36979252-36979452)
chr5 (22-131)||(31722012-31722121)
chr5 (22-131)||(31742505-31742615)
chr5 (22-123)||(24436169-24436270)
[»] chr7 (2 HSPs)
chr7 (22-131)||(38485907-38486016)
chr7 (36-131)||(9350068-9350163)
[»] chr3 (3 HSPs)
chr3 (22-127)||(30935011-30935116)
chr3 (21-131)||(7966698-7966805)
chr3 (30-131)||(1652506-1652608)
[»] chr8 (3 HSPs)
chr8 (24-131)||(5214937-5215044)
chr8 (22-131)||(35062801-35062910)
chr8 (22-131)||(30235746-30235856)
[»] chr1 (4 HSPs)
chr1 (22-128)||(2987756-2987862)
chr1 (22-131)||(4652129-4652238)
chr1 (25-131)||(11839561-11839668)
chr1 (87-131)||(37582509-37582553)
[»] chr2 (5 HSPs)
chr2 (22-131)||(31902042-31902151)
chr2 (22-128)||(9926549-9926653)
chr2 (59-131)||(6173847-6173919)
chr2 (25-80)||(18681423-18681478)
chr2 (29-98)||(33788288-33788358)
[»] chr4 (1 HSPs)
chr4 (25-131)||(19432382-19432489)
[»] chr6 (1 HSPs)
chr6 (22-131)||(26215652-26215762)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 36979252 - 36979452
Alignment:
Q  20 gtgtgtttgttttcgagtgttccgcatatatacggcaccttagtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaa 119  Q
    |||||||||||| || | |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  36979252 gtgtgtttgtttccgggcgttccgcatatatacgacaccttagtttatattttctttaacaccggtctctgttcgtcttgtgcagagacctgacttttaa 36979351  T
Q  120 taaaattttgctcatt-------nnnnnnnnngtactatgtaaatataaatcaaatccgtttgcacctttagtcacatgggttctactttcaggaccccg 212  Q
    ||| ||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36979352 taatattttgctcattaaaaaaaaaaaaaaacgtactatgtaaatataaatcaaatccgtttgcacctttagtcacatgggttctactttcaggaccccg 36979451  T
Q  213 c 213  Q
    |    
T  36979452 c 36979452  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 31722012 - 31722121
Alignment:
Q  22 gtgtttgttttcgagtgttccgcatatatacggcaccttagtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaata 121  Q
    ||||||||||||| ||||||||  |||||||||| ||||||||| || ||||| ||||| |||| ||||||||||||||||  |||||||| ||||||||    
T  31722012 gtgtttgttttcgggtgttccgtctatatacggcgccttagtttgtactttctgtaacatcggtctctgttcgtcttgtgcaaagacctgatttttaata 31722111  T
Q  122 aaattttgct 131  Q
    ||||||||||    
T  31722112 aaattttgct 31722121  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 31742505 - 31742615
Alignment:
Q  22 gtgtttgttttcgagtgttccgcatatatacggcacctta-gtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaat 120  Q
    ||||||||||||| ||||||||| |||||||||| ||||  |||| || ||  | |||||||||| |||||||||||||||| | || | |  |||||||    
T  31742505 gtgtttgttttcgggtgttccgcctatatacggcgccttttgtttgtacttcttgtaacaccggtctctgttcgtcttgtgcagggatcaggtttttaat 31742604  T
Q  121 aaaattttgct 131  Q
    |||||||||||    
T  31742605 aaaattttgct 31742615  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 24436169 - 24436270
Alignment:
Q  22 gtgtttgttttcgagtgttccgcatatatacggcaccttagtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaata 121  Q
    |||||||||||||  |||||||  |||||| | |  |||||||| || ||||  |||||||||| | | |||||||||||| ||||||||| ||||||||    
T  24436169 gtgtttgttttcggatgttccgactatatatgacgtcttagtttgtactttccataacaccggtctttattcgtcttgtgcagagacctgatttttaata 24436268  T
Q  122 aa 123  Q
    ||    
T  24436269 aa 24436270  T

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Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 38485907 - 38486016
Alignment:
Q  22 gtgtttgttttcgagtgttccgcatatatacggcaccttagtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaata 121  Q
    ||||||||||||| ||||||||| ||| |||| | |||||||||||| ||||| ||||||| || ||||||||||||| || ||||||||| ||||||||    
T  38485907 gtgtttgttttcgggtgttccgcctatttacgacgccttagtttatactttctgtaacaccagtctctgttcgtcttgagcagagacctgatttttaata 38486006  T
Q  122 aaattttgct 131  Q
    ||||||||||    
T  38486007 aaattttgct 38486016  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 9350068 - 9350163
Alignment:
Q  36 gtgttccgcatatatacggcaccttagtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaataaaattttgct 131  Q
    ||||||||| |||||||||| |||| |||| || ||| | |||||||| | |||||||||||||||| ||||||||  ||||||||||||||||||    
T  9350068 gtgttccgcctatatacggcgccttggtttgtactttttgtaacaccgatctctgttcgtcttgtgcagagacctggtttttaataaaattttgct 9350163  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 30935116 - 30935011
Alignment:
Q  22 gtgtttgttttcgagtgttccgcatatatacggcaccttagtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaata 121  Q
    ||||||||||||| ||||| ||| |||||||| ||||||||||| |||||||  ||| |||||| |||||||||||||| | ||||||||| |||||||     
T  30935116 gtgtttgttttcgggtgtttcgcttatatacgacaccttagtttgtattttcagtaagaccggtctctgttcgtcttgtacagagacctgatttttaatt 30935017  T
Q  122 aaattt 127  Q
    ||||||    
T  30935016 aaattt 30935011  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 7966805 - 7966698
Alignment:
Q  21 tgtgtttgttttcgagtgttccgcatatatacggcaccttagtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaat 120  Q
    |||||||||||||| ||||||||  ||||||||||| |||| ||  || ||||| |||||| | | ||||||||| |||||  ||||||||| |||||||    
T  7966805 tgtgtttgttttcgggtgttccgtctatatacggcatcttaattg-tactttctgtaacacggatctctgttcgtattgtg--gagacctgatttttaat 7966709  T
Q  121 aaaattttgct 131  Q
    |||||||||||    
T  7966708 aaaattttgct 7966698  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 1652608 - 1652506
Alignment:
Q  30 tttcgagtgttccgcatatatacggcacctt-agtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaataaaatttt 128  Q
    ||||| ||||||||| |||||||| | |||| ||||| || ||||| | ||| |||| |||||| ||||||||| ||||||| | |||||||||||||||    
T  1652608 tttcgggtgttccgcctatatacgacgcctttagtttgtactttctgtgacatcggtctctgtttgtcttgtgcagagacctaatttttaataaaatttt 1652509  T
Q  129 gct 131  Q
    |||    
T  1652508 gct 1652506  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 5215044 - 5214937
Alignment:
Q  24 gtttgttttcgagtgttccgcatatatacggcaccttagtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaataaa 123  Q
    ||||||||||| ||||| ||| |||||||||| ||||||||| || ||||| ||||| |||| |||||||||||| ||| | || |||| ||||||||||    
T  5215044 gtttgttttcgggtgtttcgcctatatacggcgccttagtttgtactttctgtaacatcggtctctgttcgtcttatgcagggatctgatttttaataaa 5214945  T
Q  124 attttgct 131  Q
    ||||||||    
T  5214944 attttgct 5214937  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 35062801 - 35062910
Alignment:
Q  22 gtgtttgttttcgagtgttccgcatatatacggcaccttagtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaata 121  Q
    ||||||||||||| |||||| |  ||||||||||   ||| ||| |||||||| |||||| | | |||||| ||||||||| ||||||||| ||||||||    
T  35062801 gtgtttgttttcgggtgttctgtctatatacggcgtattaatttgtattttctgtaacactgttctctgtttgtcttgtgcagagacctgatttttaata 35062900  T
Q  122 aaattttgct 131  Q
    ||||||||||    
T  35062901 aaattttgct 35062910  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 30235856 - 30235746
Alignment:
Q  22 gtgtttgttttcgagtgttccgcatatatacggcacctt-agtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaat 120  Q
    |||||||||||||  |||||||| |||||||||  |||| ||||| ||  |||| |||||||||| | |||| |||||| || ||||| ||  |||||||    
T  30235856 gtgtttgttttcggatgttccgcctatatacggagcctttagtttgtaccttctgtaacaccggtctttgtttgtcttgcgcagagacttggtttttaat 30235757  T
Q  121 aaaattttgct 131  Q
    |||| ||||||    
T  30235756 aaaactttgct 30235746  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 2987862 - 2987756
Alignment:
Q  22 gtgtttgttttcgagtgttccgcatatatacggcaccttagtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaata 121  Q
    |||||||||||||  |||||||| |||||||||| ||||||||| || ||||  ||| | |||||||| || ||||||||  ||||||||| ||||||||    
T  2987862 gtgtttgttttcggatgttccgcctatatacggcgccttagtttgtactttcggtaatatcggtatctatttgtcttgtgtagagacctgatttttaata 2987763  T
Q  122 aaatttt 128  Q
    |||||||    
T  2987762 aaatttt 2987756  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 4652129 - 4652238
Alignment:
Q  22 gtgtttgttttcgagtgttccgcatatatacggcaccttagtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaata 121  Q
    ||||||||||||  ||||||||| |||||||||   |||||||| || ||||| |||||||||| ||| |||||||||||| || || ||  ||||||||    
T  4652129 gtgtttgttttcaggtgttccgcctatatacggtgtcttagtttgtactttctataacaccggtctctcttcgtcttgtgcagaaacttggtttttaata 4652228  T
Q  122 aaattttgct 131  Q
    ||||||||||    
T  4652229 aaattttgct 4652238  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 11839561 - 11839668
Alignment:
Q  25 tttgttttcgagtgttccgcatatatacggcacctt-agtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaataaa 123  Q
    |||||||| | ||||||||| | |||||| | |||| ||||| || ||||| |||||| ||| | |||||||||||||| ||||||||| ||||||||||    
T  11839561 tttgtttttgggtgttccgcttttatacgacgcctttagtttgtactttctgtaacacaggtctttgttcgtcttgtgcagagacctgatttttaataaa 11839660  T
Q  124 attttgct 131  Q
    ||||||||    
T  11839661 attttgct 11839668  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 37582509 - 37582553
Alignment:
Q  87 tctgttcgtcttgtgcggagacctgacttttaataaaattttgct 131  Q
    |||||||||||||||| ||||| ||  ||||||||||||||||||    
T  37582509 tctgttcgtcttgtgcagagacttggtttttaataaaattttgct 37582553  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 31902151 - 31902042
Alignment:
Q  22 gtgtttgttttcgagtgttccgcatatatacggcaccttagtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaata 121  Q
    ||||| ||||||| ||||||  | |||||||||| | ||  ||| || ||||| |||||||||| ||||||||||||| || |||||||   ||||||||    
T  31902151 gtgttagttttcgggtgttctacctatatacggcgctttgatttgtactttctgtaacaccggtctctgttcgtcttgggcagagacctcgtttttaata 31902052  T
Q  122 aaattttgct 131  Q
    ||||||||||    
T  31902051 aaattttgct 31902042  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 9926549 - 9926653
Alignment:
Q  22 gtgtttgttttcgagtgttccgcatatatacggcaccttagtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaata 121  Q
    |||||| |||||||||||||||  |||||||||  ||||| ||| || ||| | |||||||| | |||||||||||||||| |||||||   ||||||||    
T  9926549 gtgtttattttcgagtgttccgtctatatacggagcctta-tttgtactttttgtaacaccg-tctctgttcgtcttgtgcagagacctagtttttaata 9926646  T
Q  122 aaatttt 128  Q
    |||||||    
T  9926647 aaatttt 9926653  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 6173919 - 6173847
Alignment:
Q  59 ttagtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaataaaattttgct 131  Q
    ||||||| || ||||  |||||| ||| || ||||||||||||| |||| |||| ||||||||||||||||||    
T  6173919 ttagtttgtactttccgtaacactggtctcagttcgtcttgtgcagagatctgatttttaataaaattttgct 6173847  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 18681423 - 18681478
Alignment:
Q  25 tttgttttcgagtgttccgcatatatacggcaccttagtttatattttctttaaca 80  Q
    |||||||||| ||||||||| |||||||| ||||||||||| || ||||| |||||    
T  18681423 tttgttttcgggtgttccgcctatatacgacaccttagtttgtactttctgtaaca 18681478  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 33788358 - 33788288
Alignment:
Q  29 ttttcgagtgttccgcatatatacggcacc-ttagtttatattttctttaacaccggtatctgttcgtctt 98  Q
    |||||| |||||||||||||||||||| || ||||||| |||| ||  || ||||||| ||||||||||||    
T  33788358 ttttcgggtgttccgcatatatacggcgcctttagtttgtattctcggtatcaccggtctctgttcgtctt 33788288  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 19432382 - 19432489
Alignment:
Q  25 tttgttttcgagtgttccgcatatatacggcacctta-gtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaataaa 123  Q
    ||||||||||  |||||||  |||||||||| ||||  |||| ||  |||| |||||| ||||||||| ||||||||||  |||||||  ||||||||||    
T  19432382 tttgttttcggatgttccgtctatatacggcgccttttgtttgtaccttctgtaacactggtatctgtccgtcttgtgcaaagacctgttttttaataaa 19432481  T
Q  124 attttgct 131  Q
    ||||||||    
T  19432482 attttgct 19432489  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 26215762 - 26215652
Alignment:
Q  22 gtgtttgttttcgagtgttccgcatatatacggcacctt-agtttatattttctttaacaccggtatctgttcgtcttgtgcggagacctgacttttaat 120  Q
    ||||||||||||  ||| ||||||||||||| |  |||| | ||| |||||||| |||||  ||| ||||||| ||||||||  |||||||  |||||||    
T  26215762 gtgtttgttttcaggtggtccgcatatatacagtgcctttaatttgtattttctgtaacattggtctctgttcatcttgtgcatagacctgttttttaat 26215663  T
Q  121 aaaattttgct 131  Q
    |||||||||||    
T  26215662 aaaattttgct 26215652  T

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