View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20553_low_6 (Length: 519)

Name: NF20553_low_6
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20553_low_6
NF20553_low_6
[»] chr2 (6 HSPs)
chr2 (18-112)||(27652004-27652098)
chr2 (428-509)||(27652254-27652337)
chr2 (33-80)||(11683105-11683152)
chr2 (33-80)||(11718006-11718053)
chr2 (109-162)||(11684292-11684345)
chr2 (109-162)||(11716813-11716866)


Alignment Details
Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 27652004 - 27652098
Alignment:
Q  18 ttataaacatcagtagaataagaagaagcacattgacttgcttctcaaccctatctctgaccagtgaccacttctttgatcagctcctctcgatt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27652004 ttataaacatcagtagaataagaagaagcacattgacttgcttctcaaccctatctctgaccagtgaccacttctttgatcagctcctctcgatt 27652098  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 428 - 509
Target Start/End: Original strand, 27652254 - 27652337
Alignment:
Q  428 taacgaaagaaacatccaaccagtagcgagnnnnnnn--aatgtaaaaacagctaacccttcccaattttctattagacctatg 509  Q
    ||||||||||||||||||||||||||||||         ||||||||||||||||||| |||||||||||||||||||||||||    
T  27652254 taacgaaagaaacatccaaccagtagcgagtttttttttaatgtaaaaacagctaaccattcccaattttctattagacctatg 27652337  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 11683105 - 11683152
Alignment:
Q  33 gaataagaagaagcacattgacttgcttctcaaccctatctctgacca 80  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||    
T  11683105 gaataagaggaagcacattgacttgattctcaaccctatctctgacca 11683152  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 11718053 - 11718006
Alignment:
Q  33 gaataagaagaagcacattgacttgcttctcaaccctatctctgacca 80  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||    
T  11718053 gaataagaggaagcacattgacttgattctcaaccctatctctgacca 11718006  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 11684292 - 11684345
Alignment:
Q  109 gattatgcctctatctaattagttgtaacgtttaacaacaactcgttattatat 162  Q
    |||||||||||||||||||| |||  || |||||||||||||||||||||||||    
T  11684292 gattatgcctctatctaattggttacaatgtttaacaacaactcgttattatat 11684345  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 11716866 - 11716813
Alignment:
Q  109 gattatgcctctatctaattagttgtaacgtttaacaacaactcgttattatat 162  Q
    |||||||||||||||||||| |||  || |||||||||||||||||||||||||    
T  11716866 gattatgcctctatctaattggttacaatgtttaacaacaactcgttattatat 11716813  T

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