View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20554_high_15 (Length: 262)
Name: NF20554_high_15
Description: NF20554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20554_high_15 |
 | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0060 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 63526 - 63742
Alignment:
| Q |
12 |
atgaagatcacacttacgatatagccgaataattattctttttccttccaatcaaattaatcaaaacatgttattggctatataataatgtacattg--- |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63526 |
atgaagatcacacttacgatatagccgaataattattctttttccttccaatcaaattaatcaaaacatgttattggctatataataatgtacattgaaa |
63625 |
T |
|
| Q |
109 |
nnnnnnnnnccaccaatatcatatttttcaatcatcatgacaatccaaaatcgtatcaagagaaacacaaacatcactagaaacaacaacaaacttaaca |
208 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
63626 |
aaaaaaaaaccaccaacatcatatttttcaatcatcatgaccatccaaaatcgtatcaagagaaacacaaacatcactagaaacaac-acaaacttaaca |
63724 |
T |
|
| Q |
209 |
atttgtctccacatcccc |
226 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
63725 |
atttgactccacatcccc |
63742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 30302273 - 30302187
Alignment:
| Q |
118 |
ccaccaatatcatatttttcaatcatcatgacaatccaaaatcgtatcaagagaaacacaaacatcactagaaacaacaacaaactt |
204 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| |||| |
|
|
| T |
30302273 |
ccaccaacatcatatttttcaatcatcatgactatccaaaatcgtatcaagagaaacacaaacatcactaacagcaacaacacactt |
30302187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 30301259 - 30301180
Alignment:
| Q |
150 |
aatccaaaatcgtatcaagagaaacacaaacatcactagaaacaacaacaaacttaacaatttgtctccacatccccatc |
229 |
Q |
| |
|
||||||||||| |||||| |||||||| |||||| ||||||||||||| | | |||||||| ||||||||||||||||| |
|
|
| T |
30301259 |
aatccaaaatcttatcaaaagaaacactaacatctctagaaacaacaatacatctaacaattggtctccacatccccatc |
30301180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University