View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20554_high_3 (Length: 521)

Name: NF20554_high_3
Description: NF20554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20554_high_3
NF20554_high_3
[»] chr1 (10 HSPs)
chr1 (1-512)||(51854963-51855474)
chr1 (115-510)||(51858624-51859022)
chr1 (5-510)||(51756273-51756783)
chr1 (145-510)||(51762605-51762965)
chr1 (313-512)||(51381291-51381490)
chr1 (220-273)||(51377913-51377966)
chr1 (4-57)||(51838336-51838389)
chr1 (1-53)||(51832829-51832881)
chr1 (458-510)||(51782817-51782869)
chr1 (476-512)||(51832389-51832425)
[»] chr6 (2 HSPs)
chr6 (14-510)||(4743373-4743878)
chr6 (14-510)||(4182529-4183034)
[»] chr3 (2 HSPs)
chr3 (476-510)||(23197030-23197064)
chr3 (466-512)||(23234855-23234901)
[»] scaffold0710 (1 HSPs)
scaffold0710 (1-57)||(2266-2323)
[»] chr7 (1 HSPs)
chr7 (223-272)||(27755976-27756025)


Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Complemental strand, 51855474 - 51854963
Alignment:
Q  1 aagagaaatttataatctagggtggaagatttaaatgattgttaactatataaaatgtaatgcacgatgacaaaactgtaactaataagaaaattgaaat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51855474 aagagaaatttataatctagagtggaagatttaaatgattgttaactatataaaatgtaatgcacgatgacaaaactctaactaataagaaaattgaaat 51855375  T
Q  101 aacgtagcagtttctcaagccgcatattccatacaccataaatcaacagtaacccgtgaagtcattggtaaccagaaccagcataaaataaataacaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51855374 aacgtagcagtttctcaagccgcatattccatacaccataaatcaacagtaacccgtgaagtcattggtaaccagaaccagcataaaataaataacaaga 51855275  T
Q  201 tcataagttcacatagcacaacatctacatcctaatcctgagaaaaaggtgatatcaaacttttaacgtagatttctggaaggtaggcttctggtacgag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  51855274 tcataagttcacatagcacaacatctacatcctaatcctgagaaaaatgtgatatcaaactttcaaagtagatttctggaaggtaggcttctggtacgag 51855175  T
Q  301 atcatggatattgttttgaattgcaggaatcttcaaagtatcatggatggaatcatagacagccaaactaaacttccccatcttgaaaaaatacgtcagc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51855174 atcatggatattgttttgaattgcaggaatcttcaaagtatcatggatggaatcatagacagccaaactaaacttccccatcttgaaaaaatacgtcagc 51855075  T
Q  401 acttggtcatcttcagatatatataatggtttggtatagatataacaaccacagcctcccatttgaggaacacataacaatttagtccaagattctacat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51855074 acttggtcatcttcagatatatataatggtttggtatagatataacaaccacagcctcccatttgaggaacacataacaatttagtccaagattctacat 51854975  T
Q  501 ttccatattctt 512  Q
    ||||||||||||    
T  51854974 ttccatattctt 51854963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 115 - 510
Target Start/End: Complemental strand, 51859022 - 51858624
Alignment:
Q  115 tcaagccgcatattccatacaccataaatcaacagtaacccgtgaagtcattggt---aaccagaaccagcataaaataaataacaagatcataagttca 211  Q
    |||||| |||||| |||||||||||||||||||| |||| ||| |||||||||||   ||||||||| ||||||||||||||||||||||||||||||||    
T  51859022 tcaagctgcatataccatacaccataaatcaacaataactcgtaaagtcattggtggtaaccagaacaagcataaaataaataacaagatcataagttca 51858923  T
Q  212 catagcacaacatctacatcctaatcctgagaaaaaggtgatatcaaacttttaacgtagatttctggaaggtaggcttctggtacgagatcatggatat 311  Q
    |||||||||||||||||||| |||| |||||||| ||||||||||||| ||| || ||||| ||||||||||||| |||||  ||| |||||||||||||    
T  51858922 catagcacaacatctacatcttaatactgagaaagaggtgatatcaaagtttcaatgtagacttctggaaggtagacttcttttaccagatcatggatat 51858823  T
Q  312 tgttttgaattgcaggaatcttcaaagtatcatggatggaatcatagacagccaaactaaacttccccatcttgaaaaaatacgtcagcacttggtcatc 411  Q
    ||||||||||| ||||||||||||| |||||||  |||||||||||||||||||| ||||| |||||  |||||||||||||  |||||| | || ||||    
T  51858822 tgttttgaatttcaggaatcttcaatgtatcattaatggaatcatagacagccaacctaaatttccctctcttgaaaaaatatatcagcattaggccatc 51858723  T
Q  412 ttcagatatatataatggtttggtatagatataacaaccacagcctcccatttgaggaacacataacaatttagtccaagattctacatttccatattc 510  Q
    ||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  51858722 ttcagatatatataatactttggtatagatataacaaccacaacctcccatttgaggaacacttaacaatttagtccaagattctacatttccatattc 51858624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 5 - 510
Target Start/End: Original strand, 51756273 - 51756783
Alignment:
Q  5 gaaatttataatctagggtggaagatttaaatgattgttaactatataaaa-tgtaatgcacgatgacaaaa-------ctgtaactaataagaaaattg 96  Q
    ||||||||||||||| | |||||||||| || |||||||||  |||||||| ||||||||| ||||||||||       || ||||||| ||  ||||      
T  51756273 gaaatttataatctatgatggaagatttgaaggattgttaaacatataaaaatgtaatgcatgatgacaaaatcaacaactctaactaacaaataaatga 51756372  T
Q  97 aaataacgtagcagtttctcaagccgcatattccatacaccataaatcaacagtaacccgtgaagtcattggtaaccagaaccagcataaaataaataac 196  Q
    ||||||| ||||| ||||||||||| |||||| |  ||| ||||||| |||| |||||||| | |||||||||||||||||  ||||||||  |||||||    
T  51756373 aaataacatagcaatttctcaagcctcatatttctcacatcataaattaacaataacccgtaatgtcattggtaaccagaaaaagcataaatcaaataac 51756472  T
Q  197 aagatcataagttcacatagcacaacatctacatcctaatcctgagaaaaaggtgatatcaaacttttaacgtagatttctggaaggtaggcttctggt- 295  Q
    |||| ||||||||||||| |||||||||||| |||||||| |||||| ||||||||||||||||| | || || || |||||||| | |  |||| |||     
T  51756473 aagaccataagttcacattgcacaacatctaaatcctaatactgagataaaggtgatatcaaactctcaaagtggacttctggaatgcaaacttcaggta 51756572  T
Q  296 --acgagatcatggatattgttttgaattgcaggaatcttcaaagtatcatggatggaatcatagacagccaaactaaacttccccatcttgaaaaaata 393  Q
      |  |||||||| || ||||||||   | |||||||||| ||||||||||  ||||||||||||| |||||||||||| || ||| |||| | ||||||    
T  51756573 tcatcagatcatgaatgttgttttgggcttcaggaatcttaaaagtatcatttatggaatcatagaaagccaaactaaattttcccctcttcacaaaata 51756672  T
Q  394 cgtcagcacttggtcatcttcagatatatataatggtttggtatagatataacaaccacagcctcccatttgaggaacacataacaatttagtccaagat 493  Q
    | |||||||||||||||| ||||| |||||||||||||||||||||||||||  |       |||||||||||||||||| |||||||||||||||||||    
T  51756673 catcagcacttggtcatcctcagaaatatataatggtttggtatagatataatga------tctcccatttgaggaacacttaacaatttagtccaagat 51756766  T
Q  494 tctacatttccatattc 510  Q
    | | |||||||||||||    
T  51756767 tgtccatttccatattc 51756783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 145 - 510
Target Start/End: Original strand, 51762605 - 51762965
Alignment:
Q  145 aacagtaacccgtgaagtcattggtaaccagaaccagcataaaataaataacaagatcataagttcacatagcacaacatctacatcctaatcctgagaa 244  Q
    |||| |||||||| |||||||||| ||||||||  |||||  | |||||||||||||||        ||||||||| |||||||||||||||  ||| ||    
T  51762605 aacaataacccgtaaagtcattggaaaccagaaaaagcatgtattaaataacaagatca--------catagcacagcatctacatcctaatattgaaaa 51762696  T
Q  245 aaaggtgatatcaaacttttaacgtagatttctggaaggtaggcttctggtacga---gatcatggatattgttttgaattgcaggaatcttcaaagtat 341  Q
    ||||||||||||||||| | |||||||| |||  ||| | ||  |  |||||  |   ||||||| || ||||||||||||  ||||||||| |||||||    
T  51762697 aaaggtgatatcaaactctcaacgtagacttccagaatgcagaataatggtatcaacggatcatgaatgttgttttgaattttaggaatcttaaaagtat 51762796  T
Q  342 catggatggaatcatagacagccaaactaaacttccccatcttgaaaaaatacgtcagcacttggtcatcttcagatatatataatggtttggtatagat 441  Q
    |||  |||||| |||||||| |||||||||| ||||||||||| | || |||| |||||||||||||||||||||||||||||||||  |||||  ||      
T  51762797 catttatggaaccatagacaaccaaactaaatttccccatcttcagaatatacatcagcacttggtcatcttcagatatatataatgccttggttaagga 51762896  T
Q  442 ataacaaccacagcctcccatttgaggaacacataacaatttagtccaagattctacatttccatattc 510  Q
    |||| ||||||   |||| ||||||||||||| |||||||||||||||||||| | |||||||||||||    
T  51762897 ataaaaaccacgatctcctatttgaggaacacttaacaatttagtccaagattgtccatttccatattc 51762965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 512
Target Start/End: Original strand, 51381291 - 51381490
Alignment:
Q  313 gttttgaattgcaggaatcttcaaagtatcatggatggaatcatagacagccaaactaaacttccccatcttgaaaaaatacgtcagcacttggtcatct 412  Q
    |||||||||| |||||||||||||||||||||   ||||||||||||||  |||||| || ||||||||||| | ||| | | |||  ||||||||||||    
T  51381291 gttttgaatttcaggaatcttcaaagtatcatttttggaatcatagacaagcaaactgaatttccccatctttagaaactgcatcaaaacttggtcatct 51381390  T
Q  413 tcagatatatataatggtttggtatagatataacaaccacagcctcccatttgaggaacacataacaatttagtccaagattctacatttccatattctt 512  Q
    || || ||||||| ||  | |  ||||  |  | ||||||  ||| |||| | ||||| ||  ||||||||||||||||| ||| |||||||||||||||    
T  51381391 tccgaaatatatactgactggcaatagccaagaaaaccacgaccttccatgtaaggaatactgaacaatttagtccaagactcttcatttccatattctt 51381490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 51377913 - 51377966
Alignment:
Q  220 aacatctacatcctaatcctgagaaaaaggtgatatcaaacttttaacgtagat 273  Q
    |||||||||||||||||  |||||||||||||| |||||||| | |||||||||    
T  51377913 aacatctacatcctaatattgagaaaaaggtgagatcaaactctcaacgtagat 51377966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 51838389 - 51838336
Alignment:
Q  4 agaaatttataatctagggtggaagatttaaatgattgttaactatataaaatg 57  Q
    |||||||||||||||| || ||||||||| |||||| | |||||||||||||||    
T  51838389 agaaatttataatctatggaggaagatttgaatgatagctaactatataaaatg 51838336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 51832881 - 51832829
Alignment:
Q  1 aagagaaatttataatctagggtggaagatttaaatgattgttaactatataa 53  Q
    ||||||||||||||||||| |  ||||||||| |||||||||||| |||||||    
T  51832881 aagagaaatttataatctatgtaggaagatttgaatgattgttaattatataa 51832829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 510
Target Start/End: Complemental strand, 51782869 - 51782817
Alignment:
Q  458 cccatttgaggaacacataacaatttagtccaagattctacatttccatattc 510  Q
    ||||||| |||||||| ||| |||||| ||||||||| | |||||||||||||    
T  51782869 cccattttaggaacacttaataatttattccaagattgttcatttccatattc 51782817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 476 - 512
Target Start/End: Complemental strand, 51832425 - 51832389
Alignment:
Q  476 aacaatttagtccaagattctacatttccatattctt 512  Q
    ||||||||||||||||||| | |||||||||||||||    
T  51832425 aacaatttagtccaagattgttcatttccatattctt 51832389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 14 - 510
Target Start/End: Original strand, 4743373 - 4743878
Alignment:
Q  14 aatctagggtggaagatttaaatgattgt-taactatataaaatgtaatgcacgatgacaaaactgtaact------aataagaaaattgaaataacgta 106  Q
    |||||| |||||||||||| ||| |||   ||||||||||||||||| |||||||||||||||| | ||||      |||||  ||||| ||| ||| ||    
T  4743373 aatctatggtggaagatttgaataatttactaactatataaaatgtagtgcacgatgacaaaaccgcaactctaaccaataaataaattaaaagaacata 4743472  T
Q  107 gcagtttctcaagccgcatattccatacaccataaatcaacagtaacccgtgaagtcattggtaaccagaaccagcataaaataaataacaagatcataa 206  Q
    ||| | ||||||||||||||||||| | ||||||| | |||| |||| ||| || |||||| |||||||||| || ||||| ||||||||||| |||||     
T  4743473 gcaatatctcaagccgcatattccacataccataatttaacaataactcgtaaaatcattgttaaccagaacaagtataaa-taaataacaagttcatag 4743571  T
Q  207 gttcacatagcacaacatctacatcctaatcctgagaaaaaggtgatatcaaacttttaacgtagatttctggaaggtaggcttctggtacga---gatc 303  Q
     |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || |||||  | |||||  |||  |  |  | | |   || |    
T  4743572 tttcacatagcacaacatctacatcctaatcctgaaaaaaaggtgatatcaaactctcaatgtagacgtatggaaaatagaatcttccttccatcggaac 4743671  T
Q  304 atggatattgttttgaattgcaggaatcttcaaagtatcatggatggaatcatagacagccaaactaaacttccccatcttgaaaaaatacgtcagcact 403  Q
     ||||| |||  ||||||| ||||||||||  |||||||||  |||||||||||||||||||||||||| |||| | |||| | ||||||| ||||||||    
T  4743672 ttggatgttgccttgaatttcaggaatcttataagtatcatttatggaatcatagacagccaaactaaatttcctcctcttcataaaatacatcagcact 4743771  T
Q  404 tggtcatcttcagatatatataatggtttggtatagatataacaaccacagcctcccatttgaggaacacataacaatttagtccaagattctacatttc 503  Q
    |||||||  ||||| |||||||||||||| ||  |||||||   |  |    |||||||||||||||||| |||||||||||||||||||| | ||||||    
T  4743772 tggtcatgctcagaaatatataatggtttagttaagatatatatataagcatctcccatttgaggaacacttaacaatttagtccaagattgtccatttc 4743871  T
Q  504 catattc 510  Q
    |||||||    
T  4743872 catattc 4743878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 14 - 510
Target Start/End: Original strand, 4182529 - 4183034
Alignment:
Q  14 aatctagggtggaagatttaaatgattgt-taactatataaaatgtaatgcacgatgacaaaactgtaacta------ataagaaaattgaaataacgta 106  Q
    |||||| |||||||||||| ||| |||   |||||||||||||| || |||||||||||||||| | ||||       ||||  ||||| ||| ||| ||    
T  4182529 aatctatggtggaagatttgaataatttactaactatataaaatatagtgcacgatgacaaaaccgcaactctaacccataaataaattaaaagaacata 4182628  T
Q  107 gcagtttctcaagccgcatattccatacaccataaatcaacagtaacccgtgaagtcattggtaaccagaaccagcataaaataaataacaagatcataa 206  Q
    ||| | ||||||||||||||||||| | ||||||| | |||| |||| ||| || |||||| |||||||||| || ||||| ||||||||||| |||||     
T  4182629 gcaatatctcaagccgcatattccacataccataatttaacaataactcgtaaaatcattgttaaccagaacaagtataaa-taaataacaagttcatag 4182727  T
Q  207 gttcacatagcacaacatctacatcctaatcctgagaaaaaggtgatatcaaacttttaacgtagatttctggaaggtaggcttctggtacga---gatc 303  Q
     |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || |||||  | |||||  |||  |  |  | | |   || |    
T  4182728 tttcacatagcacaacatctacatcctaatcctgaaaaaaaggtgatatcaaactctcaatgtagacgtatggaaaatagaatcttccttccatcggaac 4182827  T
Q  304 atggatattgttttgaattgcaggaatcttcaaagtatcatggatggaatcatagacagccaaactaaacttccccatcttgaaaaaatacgtcagcact 403  Q
     ||||| |||  ||||||| ||||||||||  |||||||||  |||||||||||||||||||||||||| |||| | |||| | ||||||| ||||||||    
T  4182828 ttggatgttgccttgaatttcaggaatcttataagtatcatttatggaatcatagacagccaaactaaatttcctcctcttcataaaatacatcagcact 4182927  T
Q  404 tggtcatcttcagatatatataatggtttggtatagatataacaaccacagcctcccatttgaggaacacataacaatttagtccaagattctacatttc 503  Q
    |||||||  ||||| |||||||||||||| ||  |||||||   |  |    |||||||||||||||||| |||||||||||||||||||| | ||||||    
T  4182928 tggtcatgctcagaaatatataatggtttagttaagatatatatataagcatctcccatttgaggaacacttaacaatttagtccaagattgtccatttc 4183027  T
Q  504 catattc 510  Q
    |||||||    
T  4183028 catattc 4183034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 510
Target Start/End: Complemental strand, 23197064 - 23197030
Alignment:
Q  476 aacaatttagtccaagattctacatttccatattc 510  Q
    ||||||||||||||||||||| |||||||||||||    
T  23197064 aacaatttagtccaagattcttcatttccatattc 23197030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 512
Target Start/End: Original strand, 23234855 - 23234901
Alignment:
Q  466 aggaacacataacaatttagtccaagattctacatttccatattctt 512  Q
    ||||||||  ||||||||||||||||| ||||| |||||||||||||    
T  23234855 aggaacacgaaacaatttagtccaagactctacgtttccatattctt 23234901  T

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Target: scaffold0710 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 2266 - 2323
Alignment:
Q  1 aagagaaatttataatctagggtggaagatttaaatgatt-gttaactatataaaatg 57  Q
    ||||||||||||||||||| |  ||||||||| ||||||| | |||||||||||||||    
T  2266 aagagaaatttataatctatgtaggaagatttgaatgattagctaactatataaaatg 2323  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 27756025 - 27755976
Alignment:
Q  223 atctacatcctaatcctgagaaaaaggtgatatcaaacttttaacgtaga 272  Q
    ||||||||||||||   ||||| ||||||||||||||||||||| |||||    
T  27756025 atctacatcctaatgacgagaacaaggtgatatcaaacttttaatgtaga 27755976  T

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