View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20554_low_1 (Length: 628)

Name: NF20554_low_1
Description: NF20554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20554_low_1
NF20554_low_1
[»] chr4 (7 HSPs)
chr4 (44-611)||(45863424-45863991)
chr4 (460-600)||(45883383-45883523)
chr4 (456-596)||(56209695-56209835)
chr4 (456-599)||(47292365-47292507)
chr4 (1-47)||(45864042-45864088)
chr4 (463-599)||(54303286-54303422)
chr4 (111-166)||(45883671-45883726)
[»] chr2 (1 HSPs)
chr2 (475-600)||(24348416-24348541)
[»] chr5 (2 HSPs)
chr5 (463-596)||(10520227-10520360)
chr5 (464-600)||(35803493-35803629)
[»] chr8 (1 HSPs)
chr8 (458-600)||(7973600-7973742)


Alignment Details
Target: chr4 (Bit Score: 523; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 44 - 611
Target Start/End: Complemental strand, 45863991 - 45863424
Alignment:
Q  44 attttaagcccgttaccggcttcaacaagcttctcgtcaaactcaacttattaacagttgactcttcggagcgtgttccacacggcagtgtcttgaagat 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45863991 attttaagcccgttaccggcttcaacaagcttctcgtcaaactcaacttgttaacagttgactcttcggagcgtgttccacacggcagtgtcttgaagat 45863892  T
Q  144 cattttgcgtggacaggttttcccgtctccctaacggagcacggacgtagacaacagacatgacactgatacacatatgtaataatttgagaaaatgaat 243  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45863891 cattttgcgcggacaggttttcccttctccctaacggagcacggacgtagacaacagacatgacactgatacacatatgtaataatttgagaaaatgaat 45863792  T
Q  244 tgaatgtgattatgtgacacgttcacacttctctnnnnnnntgaagtaattgaatgtaatcacattagtgtgcctgtgtctgtatctgagctattggata 343  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||    
T  45863791 tgaatgtgattatgtgacacgttcacacttctctaagaaaatgaagtaattgaatgtaatcacattagtgtgtctgtgtctgtgtctgagctgttggata 45863692  T
Q  344 ccagacatgcctttgaccagaggtgtcggtgcgaacatagcttcccactcatactattgctttgcttaatttttcatttcatttttctgtctatatagat 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45863691 ccagacatgcctttgaccagaggtgtcggtgcgaacatagcttcccactcatactattgctttgcttaatttttcatttcatttttctgtctatatagat 45863592  T
Q  444 agccgatcagcttctgccccaaatttgagataatttgttgaaagcagcttatgatcctcgtatttctgccgtatatcttcaaattgataatttaaattgt 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45863591 agccgatcagcttctgccccaaatttgagataatttgttgaaagcagcttatgatcctcgtatttctgccgtatatcttcaaattgataatttaaattgt 45863492  T
Q  544 ggttgggctaaagctgatgaaattcgaagacaaatcttgaatttcagaaaatcaggtgccattacaat 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45863491 ggttgggctaaagctgatgaaattcgaagacaaatcttgaatttcagaaaatcaggtgccattacaat 45863424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 460 - 600
Target Start/End: Complemental strand, 45883523 - 45883383
Alignment:
Q  460 ccccaaatttgagataatttgttgaaagcagcttatgatcctcgtatttctgccgtatatcttcaaattgataatttaaattgtggttgggctaaagctg 559  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||  || |||||||||||||| ||||||||||| ||||||||||||   |    
T  45883523 ccccaaatttgcgataatttgttgaaagcagcttatgatcctcgtatttctggtgtgtatcttcaaattgacaatttaaattgcggttgggctaaactcg 45883424  T
Q  560 atgaaattcgaagacaaatcttgaatttcagaaaatcaggt 600  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  45883423 atgaaattcgaagacagatcttaaatttcagaaaatcaggt 45883383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 456 - 596
Target Start/End: Complemental strand, 56209835 - 56209695
Alignment:
Q  456 tctgccccaaatttgagataatttgttgaaagcagcttatgatcctcgtatttctgccgtatatcttcaaattgataatttaaattgtggttgggctaaa 555  Q
    |||||| ||| |||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  56209835 tctgcctcaattttgcgataatatgttgaaagcagcttatgatcatcgtatttctgccgtatatcttcgtattgatactttaaattgtggttgggctaaa 56209736  T
Q  556 gctgatgaaattcgaagacaaatcttgaatttcagaaaatc 596  Q
       |||||||||||||| |||||||| ||||||||||||||    
T  56209735 ctcgatgaaattcgaaggcaaatcttaaatttcagaaaatc 56209695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 456 - 599
Target Start/End: Original strand, 47292365 - 47292507
Alignment:
Q  456 tctgccccaaatttgagataatttgttgaaagcagcttatgatcctcgtatttctgccgtatatcttcaaattgataatttaaattgtggttgggctaaa 555  Q
    |||||| | |||||| ||||||||||||||||| || ||||||| |||||||||||| || | |||||| ||| ||  ||||||||||||||||||||||    
T  47292365 tctgcctcgaatttgcgataatttgttgaaagccgcatatgatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgtggttgggctaaa 47292464  T
Q  556 gctgatgaaattcgaagacaaatcttgaatttcagaaaatcagg 599  Q
     || ||||||||||||   ||||| |||||||||||||||||||    
T  47292465 -ctcatgaaattcgaaaggaaatcatgaatttcagaaaatcagg 47292507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 45864042 - 45864088
Alignment:
Q  1 ttaagagtagaatttgaagatgaagagtaacaagaatagtgaaattt 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  45864042 ttaagagtagaatttgaagatgatgagtaacaagaatagtgaaattt 45864088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 463 - 599
Target Start/End: Original strand, 54303286 - 54303422
Alignment:
Q  463 caaatttgagataatttgttgaaagcagcttatgatcctcgtatttctgccgtatatcttcaaattgataatttaaattgtggttgggctaaagctgatg 562  Q
    |||||||| |||||||||||||||||    |||||||||||||||| ||  ||||||||  | ||  | ||||| ||   |||||||| ||||   ||||    
T  54303286 caaatttgcgataatttgttgaaagccatgtatgatcctcgtatttatgttgtatatctcaatatccaaaatttgaacactggttggggtaaactagatg 54303385  T
Q  563 aaattcgaagacaaatcttgaatttcagaaaatcagg 599  Q
    |||||||||| |||||||| |||||||||||||||||    
T  54303386 aaattcgaaggcaaatcttaaatttcagaaaatcagg 54303422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 45883726 - 45883671
Alignment:
Q  111 ggagcgtgttccacacggcagtgtcttgaagatcattttgcgtggacaggttttcc 166  Q
    ||||||||||| ||||||||| |||||||| ||||||||||| || ||||||||||    
T  45883726 ggagcgtgttcaacacggcagcgtcttgaaaatcattttgcgaggccaggttttcc 45883671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 475 - 600
Target Start/End: Original strand, 24348416 - 24348541
Alignment:
Q  475 aatttgttgaaagcagcttatgatcctcgtatttctgccgtatatcttcaaattgataatttaaattgtggttgggctaaagctgatgaaattcgaagac 574  Q
    ||||| ||||||||||| ||||||||||| |||||||  || ||||| || ||||||| |||| ||||||| |||| |||||  || ||||||||||| |    
T  24348416 aattttttgaaagcagcctatgatcctcgaatttctggggtctatctccatattgatagtttagattgtgggtggggtaaagtagaagaaattcgaaggc 24348515  T
Q  575 aaatcttgaatttcagaaaatcaggt 600  Q
    | ||||||||||||| ||||||||||    
T  24348516 acatcttgaatttcaaaaaatcaggt 24348541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 463 - 596
Target Start/End: Original strand, 10520227 - 10520360
Alignment:
Q  463 caaatttgagataatttgttgaaagcagcttatgatcctcgtatttctgccgtatatcttcaaattgataatttaaattgtggttgggctaaagctgatg 562  Q
    |||||||| | |||||| ||||||||||| ||||||||| ||||||| || || |||||||| || ||  |||||| ||| ||||||||||||  |||||    
T  10520227 caaatttgcggtaatttcttgaaagcagcatatgatccttgtatttccgctgtttatcttcatatcgaccatttaagttggggttgggctaaacttgatg 10520326  T
Q  563 aaattcgaagacaaatcttgaatttcagaaaatc 596  Q
    | |||| ||| ||||| || ||||||||||||||    
T  10520327 agattcaaaggcaaattttaaatttcagaaaatc 10520360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 464 - 600
Target Start/End: Complemental strand, 35803629 - 35803493
Alignment:
Q  464 aaatttgagataatttgttgaaagcagcttatgatcctcgtatttctgccgtatatcttcaaattgataatttaaattgtggttgggctaaagctgatga 563  Q
    ||||||| ||| |||| |||||||| |||||||||||||||||||| ||| | |||||||| ||| |    ||| ||||||| ||||| |||  ||||||    
T  35803629 aaatttgcgattatttcttgaaagccgcttatgatcctcgtatttccgccatttatcttcatattcactcattagattgtggctgggcaaaatttgatga 35803530  T
Q  564 aattcgaagacaaatcttgaatttcagaaaatcaggt 600  Q
    ||||||||||||||| |  ||||| | ||||||||||    
T  35803529 aattcgaagacaaatttcaaattttaaaaaatcaggt 35803493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 458 - 600
Target Start/End: Complemental strand, 7973742 - 7973600
Alignment:
Q  458 tgccccaaatttgagataatttgttgaaagcagcttatgatcctcgtatttctgccgtatatcttcaaattgataatttaaattgtggttgggctaaagc 557  Q
    |||| |||||||| || |||||||||||||| ||||||||||||||||||||||| || ||| ||   ||| ||  |||||| ||  |||| ||||||      
T  7973742 tgcctcaaatttgcgagaatttgttgaaagccgcttatgatcctcgtatttctgctgtgtatgttgttatttatcctttaaaatgcagttgagctaaact 7973643  T
Q  558 tgatgaaattcgaagacaaatcttgaatttcagaaaatcaggt 600  Q
     |||||||||| |||  ||||| | ||||||||||||||||||    
T  7973642 cgatgaaattcaaagggaaatcataaatttcagaaaatcaggt 7973600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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