View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20554_low_12 (Length: 291)
Name: NF20554_low_12
Description: NF20554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20554_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 1755999 - 1755719
Alignment:
| Q |
1 |
agaaattagaagaaacacagtattgataaaattgagctactattaagaatgttgtaaatctagatttcatttaccataggcctcattgcttcttacatct |
100 |
Q |
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| T |
1755999 |
agaaattagaagaaacacagtattgataaaattgagctactattaagaatgttgtaaatctaaatttcatttaccataggcctcattgcttcttacatct |
1755900 |
T |
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| Q |
101 |
ctgaagcagcgattcaagca------agatggtcgttccattgctcaccaagaagattgtgaagaagcgtgtcaagaggttcatcaggccacaaagtgac |
194 |
Q |
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| T |
1755899 |
ctgaagcagcgattcaagcagagacaagatggccgttccattgctcaccaagaagattgtgaagaagcgtgtcaagaggttcatcaggccacaaagtgac |
1755800 |
T |
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| Q |
195 |
aggaaaatatgtgtgaagcaaagctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaagtagttact |
275 |
Q |
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| T |
1755799 |
aggaaaatatgtgtgaagcaaagctggcgcaggccaaagggtattgattcacaagttaggagaaaattcaagggagttact |
1755719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 119 - 212
Target Start/End: Original strand, 18704553 - 18704646
Alignment:
| Q |
119 |
caagatggtcgttccattgctcaccaagaagattgtgaagaagcgtgtcaagaggttcatcaggccacaaagtgacaggaaaatatgtgtgaag |
212 |
Q |
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| T |
18704553 |
caagatggccgttccattgctcaccaagaagattgtgaagaagcgtgtcaagaggttcatcaggccacaaagtgacaggaaaatatgtgtgaag |
18704646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 18705247 - 18705311
Alignment:
| Q |
211 |
agcaaagctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaagtagttact |
275 |
Q |
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| T |
18705247 |
agcaaagctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaaggagttact |
18705311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 18703727 - 18703767
Alignment:
| Q |
80 |
gcctcattgcttcttacatctctgaagcagcgattcaagca |
120 |
Q |
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| T |
18703727 |
gcctcattgcttcttacatatctgaagcagcgattcaagca |
18703767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 6133736 - 6133813
Alignment:
| Q |
1 |
agaaattagaagaaacacagtattgataaaattgagctactattaagaatgttgtaaatctagatttcatttaccata |
78 |
Q |
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| T |
6133736 |
agaaattagaagaaacatagtattgataaaattgagctactattaagaatgttgtaaatctaaatttcatttaccata |
6133813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 35545581 - 35545622
Alignment:
| Q |
218 |
ctggcgcaggccaaagggtattgattcacgagttaggagaaa |
259 |
Q |
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| T |
35545581 |
ctggcgcagaccaaagggtattgattcacgtgtgaggagaaa |
35545622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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