View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20554_low_13 (Length: 287)

Name: NF20554_low_13
Description: NF20554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20554_low_13
NF20554_low_13
[»] chr4 (1 HSPs)
chr4 (238-277)||(19834509-19834548)
[»] chr7 (2 HSPs)
chr7 (243-277)||(19516608-19516642)
chr7 (59-111)||(41008916-41008969)
[»] chr3 (1 HSPs)
chr3 (243-277)||(11331568-11331602)
[»] chr2 (2 HSPs)
chr2 (242-277)||(4810118-4810153)
chr2 (44-127)||(39760159-39760243)
[»] chr5 (5 HSPs)
chr5 (247-277)||(1855502-1855532)
chr5 (243-277)||(38933360-38933394)
chr5 (58-99)||(33676672-33676713)
chr5 (244-276)||(4879605-4879637)
chr5 (245-277)||(10514723-10514755)
[»] chr1 (1 HSPs)
chr1 (243-277)||(27792726-27792760)


Alignment Details
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 19834548 - 19834509
Alignment:
Q  238 taagaatctacttactatatataaaatataaatccctatg 277  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  19834548 taagtatctacttactatatataaaatataaatccctatg 19834509  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 19516608 - 19516642
Alignment:
Q  243 atctacttactatatataaaatataaatccctatg 277  Q
    |||||||||||||||||||||||||||||||||||    
T  19516608 atctacttactatatataaaatataaatccctatg 19516642  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 41008916 - 41008969
Alignment:
Q  59 taattgaaaaacttttaacagaaatagagacta-tttaaaaaattaatagagtc 111  Q
    ||||||| |||||||||||| | |||||||||| ||||||| ||||||||||||    
T  41008916 taattgagaaacttttaacaaagatagagactattttaaaatattaatagagtc 41008969  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 11331602 - 11331568
Alignment:
Q  243 atctacttactatatataaaatataaatccctatg 277  Q
    |||||||||||||||||||||||||||||||||||    
T  11331602 atctacttactatatataaaatataaatccctatg 11331568  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 4810118 - 4810153
Alignment:
Q  242 aatctacttactatatataaaatataaatccctatg 277  Q
    ||||||||||||||||||||||| ||||||||||||    
T  4810118 aatctacttactatatataaaatttaaatccctatg 4810153  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 39760243 - 39760159
Alignment:
Q  44 acattacgaatgacttaattgaaaaacttttaacagaaatagagactatttaaaaa-attaatagagtcgtgaactaatttaaaa 127  Q
    |||| |||||||| |||||||| |||||||| | | ||| | |||||||||  ||| ||||||||||| | ||||||||||||||    
T  39760243 acatgacgaatgatttaattgagaaacttttgataaaaacatagactattttgaaatattaatagagttgagaactaatttaaaa 39760159  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 277
Target Start/End: Complemental strand, 1855532 - 1855502
Alignment:
Q  247 acttactatatataaaatataaatccctatg 277  Q
    |||||||||||||||||||||||||||||||    
T  1855532 acttactatatataaaatataaatccctatg 1855502  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 38933360 - 38933394
Alignment:
Q  243 atctacttactatatataaaatataaatccctatg 277  Q
    ||||||||||||||| |||||||||||||||||||    
T  38933360 atctacttactatatgtaaaatataaatccctatg 38933394  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 33676672 - 33676713
Alignment:
Q  58 ttaattgaaaaacttttaacagaaatagagactatttaaaaa 99  Q
    |||||||| |||||||||||| ||||||||||||||| ||||    
T  33676672 ttaattgagaaacttttaacaaaaatagagactattttaaaa 33676713  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 4879605 - 4879637
Alignment:
Q  244 tctacttactatatataaaatataaatccctat 276  Q
    ||||||||||||||||||||||||||| |||||    
T  4879605 tctacttactatatataaaatataaattcctat 4879637  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 277
Target Start/End: Complemental strand, 10514755 - 10514723
Alignment:
Q  245 ctacttactatatataaaatataaatccctatg 277  Q
    |||||||||||||||||||||||||| ||||||    
T  10514755 ctacttactatatataaaatataaattcctatg 10514723  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 27792726 - 27792760
Alignment:
Q  243 atctacttactatatataaaatataaatccctatg 277  Q
    ||||||||| |||||||||||||||||||||||||    
T  27792726 atctacttattatatataaaatataaatccctatg 27792760  T

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