View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20554_low_2 (Length: 609)
Name: NF20554_low_2
Description: NF20554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20554_low_2 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 609
Target Start/End: Original strand, 8756821 - 8757435
Alignment:
| Q |
1 |
caggaactttttgctcagcataatattattaggttgcttgttggtcatttagcttttgaaactgttgaggaacatagtaagtatgctattgttagtatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8756821 |
caggaactttttgctcagcataatattattaggttgcttgttggtcatttagcttttgaaactgttgaggaacatagtaagtatgctattgttagtatga |
8756920 |
T |
|
| Q |
101 |
aagcgaattcgattcacgccgctgttgttatggctagtaataataataattctagctctaatcttaatcccaagaagggaactgaaaatgaagatggtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8756921 |
aagcgaattcgattcacgccgctgttgttatggctagtaataataataattctagctctaatcttaatcccaagaagggaactgaaaatgaagatggtgt |
8757020 |
T |
|
| Q |
201 |
tgttgttggtggtggcaataaacatggtcgtgtatagcatcatccattaggggaaagaccaagaaatctgcatagagggatcacaagtactagggcaatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
8757021 |
tgttgttggtggtggcaataaacatggtcgtgtatcacatcatccattaggtgaaagaccaagaaatctgcatagagtgatcacaagtactatggcaatt |
8757120 |
T |
|
| Q |
301 |
aatgatgcttccaagcagcccaatgaaggaaatgaagcaaatcaaaatcagaacattttggccaattccaatactcctaatggtaatggact------tg |
394 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8757121 |
catgctgcttccaagcagcccaatgaaggaaatgaagcaaatcaaaatcagaacattttggccaattccaatactcctaatggtaatggactcggtaatg |
8757220 |
T |
|
| Q |
395 |
gtaatggtaatggtaatgatggtgggaagcaaggaaatcataataatcatcagagaaattattcgcattcggggattaacatgaagggaagggaatctga |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8757221 |
gtaatggtaatggtaatgatggtgggaagcaaggaaatcataataatcatcagagaaattattcgcattcggggattaacatgaagggaagggaatctga |
8757320 |
T |
|
| Q |
495 |
agatgctgagactaaggcaagtatgaaggaaatggcagcaagagctctatggcatttggctaaaggtaatgtggcaatttgtcgaagcattacagaatca |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8757321 |
agatgctgagactaaggcaagtatgaaggaaatggcagcaagagctctatggcatttggctaaaggtaatgtggcaatttgtcgaagcattacagaatca |
8757420 |
T |
|
| Q |
595 |
agggcgttgttgtgt |
609 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8757421 |
agggcgttgttgtgt |
8757435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 32031574 - 32031485
Alignment:
| Q |
8 |
tttttgctcagcataatattattaggttgcttgttggtcatttagcttttgaaactgttgaggaacatagtaagtatgctattgttagta |
97 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||| | ||||||||||||||| | ||||||||||| ||||| |||||||||| |
|
|
| T |
32031574 |
tttttgctcagcataatattgttaggttgcttgtgagtcacattgcttttgaaactgttcaagaacatagtaaatatgcaattgttagta |
32031485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 28036319 - 28036238
Alignment:
| Q |
9 |
ttttgctcagcataatattattaggttgcttgttggtcatttagcttttgaaactgttgaggaacatagtaagtatgctatt |
90 |
Q |
| |
|
|||||||||| ||||| |||| | ||||||||| ||||| | ||||||||||| || | ||||||||||||||| ||||| |
|
|
| T |
28036319 |
ttttgctcagaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaagtattctatt |
28036238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University