View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20554_low_4 (Length: 521)
Name: NF20554_low_4
Description: NF20554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20554_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 34 - 435
Target Start/End: Complemental strand, 8292078 - 8291679
Alignment:
| Q |
34 |
caacccaagacacaagatccatttacgacactagagaataatgacgaatgaagaaaaggtcgaccaaatttattgaaatgcctaaaataaattttagtga |
133 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8292078 |
caacccaaaacacaagattcatttacgacactagagaatagagacgaatgaagaaaaggtcgaccaaatttattgaaatgcctaaaataaattttagtga |
8291979 |
T |
|
| Q |
134 |
gaccctttaaaatgtttaaaataaaggagcacaagtaaagctacactcacagtcttgtacataaaatagtttataacattattgtgtgttgcaacttgaa |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8291978 |
gaccctttaaaatgtttaaaataaaggagcacaagtaaagctacactca--gtcttgtacataaaatagtttataacattattgtgtgttgcaacttgaa |
8291881 |
T |
|
| Q |
234 |
tagattctcaatatactagtatagtacatatagaagatttataattgcatattatgacaaaagcatagactaaaattattaagatagcttaaattaaaaa |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8291880 |
tagattctcaatatactagtatagtacatatagaagatttataattgcatattatgacaaaagcatagactaaaattattaagatagcttaaatttaaaa |
8291781 |
T |
|
| Q |
334 |
gatctgcttagagttagctgcctcctctaaagaaaagtttcttcacaactaaattaccattatgatttcctatagtcacaccttgatttgaaaaactatt |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8291780 |
gatctgcttagagttagctgcctcctctaaagaaaagtttcttcacaactaaattaccattatgatttcctatagtcacaccttgatttgaaaaactatt |
8291681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 54 - 298
Target Start/End: Complemental strand, 33240431 - 33240171
Alignment:
| Q |
54 |
atttacgacactagagaataatgacgaatgaagaaaaggtcgaccaaatttattgaaatgcctaaaataaattttagtgagaccctttaaa-----atgt |
148 |
Q |
| |
|
|||||||||| |||||| || ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
33240431 |
atttacgacaatagagactagagacaaatgaagacaaggtcgaccaaatttatttaaatgcctaaaataaattttagtgagaccctttaaattaaaatat |
33240332 |
T |
|
| Q |
149 |
ttaaaat---------aaaggagcacaagtaaagctacactcacagtcttgtacataaaatagtttataacattattgtgtgttgcaacttg--aataga |
237 |
Q |
| |
|
||||| ||| |||||||||| || ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33240331 |
ataaaaataaaataaaaaaagagcacaagttaacatacac--atagtcttgtacataaa-tagtttataacattattgtgtgttgcaacttgcatataga |
33240235 |
T |
|
| Q |
238 |
ttctcaatatac--tagtatagtaca-tatagaagatttataattgcatattatgacaaaagca |
298 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33240234 |
ttctcaatatactatagtatattacattatagaaaatttataattgcatattatgacaaaagca |
33240171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 433 - 521
Target Start/End: Complemental strand, 8291617 - 8291529
Alignment:
| Q |
433 |
ttcccctctactgaaactgcgtgttcaagtttgatgcttgcattcattcccacgctcttctctagagctggaaatgagtcgagctgagt |
521 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8291617 |
ttcccctctcctgaaactgcgtgttcaagtttgatgcttgcattcattcccacgctcttctctagagctggaaatgagtcgagctgagt |
8291529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 198 - 307
Target Start/End: Complemental strand, 33246383 - 33246281
Alignment:
| Q |
198 |
aatagtttataacattattgtgtgttgcaacttgaatagattctcaatatactagtatagtacatatagaagatttataattgcatattatgacaaaagc |
297 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33246383 |
aatagtttataacattattgtgtgttgca-------taaattctcaatataatagtatattacatatagaagatttataattgcatattattacaaaagc |
33246291 |
T |
|
| Q |
298 |
atagactaaa |
307 |
Q |
| |
|
|||||||||| |
|
|
| T |
33246290 |
atagactaaa |
33246281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 433 - 496
Target Start/End: Complemental strand, 33245474 - 33245411
Alignment:
| Q |
433 |
ttcccctctactgaaactgcgtgttcaagtttgatgcttgcattcattcccacgctcttctcta |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
33245474 |
ttcccctctactgaaactgcgtgttcaagtttgatgcttacattcgttcccacgctcttctcta |
33245411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 380 - 436
Target Start/End: Complemental strand, 33246168 - 33246112
Alignment:
| Q |
380 |
aactaaattaccattatgatttcctatagtcacaccttgatttgaaaaactatttcc |
436 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||| |||| ||||||||| |
|
|
| T |
33246168 |
aactaaattaccattttgatttcctatagtcataccttgattggaaatactatttcc |
33246112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 33237950 - 33238003
Alignment:
| Q |
343 |
agagttagctgcctcctctaaagaaaagtttcttcacaactaaattaccattat |
396 |
Q |
| |
|
|||||||| | ||||||| || |||||| || |||||||||||||||||||||| |
|
|
| T |
33237950 |
agagttagttacctcctccaaggaaaagcttgttcacaactaaattaccattat |
33238003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University