View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20554_low_5 (Length: 491)
Name: NF20554_low_5
Description: NF20554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20554_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 486
Target Start/End: Complemental strand, 34996778 - 34996304
Alignment:
| Q |
17 |
ttacttttgtttttgtcacattattactttgacattgatttactttgattaaataaagcattcatctgtctctataaacttaggtcaattgatatggata |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34996778 |
ttacttttgtttttgtcacattattactttgacattgatttactttgattaaataaagcattcatctgtctctataaacttaggtcaattgatagggata |
34996679 |
T |
|
| Q |
117 |
ttgcataatgtatgcaaagtcaggtttgaattctgacactccactttatctctaatcactagaaattcaccttaaagaaataaatttctaaccactagat |
216 |
Q |
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|||||||||||||||| ||||| |||||| |||||||| |||||||||||||| || ||||||||||||||||| |||||||||| | |||||||||| |
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| T |
34996678 |
ttgcataatgtatgcagggtcagttttgaactctgacaccccactttatctctagccattagaaattcaccttaaaaaaataaatttttgaccactagat |
34996579 |
T |
|
| Q |
217 |
cacttgaagnnnnnnnt-----catttgtccttgattagagtatatcttacaatagtaaaatttcaactaatgagaagttaaactttgacaaatacacta |
311 |
Q |
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||||||||| |||| |||||| |||||||||||||| |||||||||||||||||| |||| | ||||||||||||||||||||||| |
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| T |
34996578 |
cacttgaagaaaaaaaaaaaaacattcatccttggttagagtatatcttgaaatagtaaaatttcaactgatgaaacgttaaactttgacaaatacacta |
34996479 |
T |
|
| Q |
312 |
gcataaaattaaaataggacaaagaagttgaagaccgacctctttatcttagtgggtgaggaggtaggtaatttcaagtaaatatttgctcaaagaaaag |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34996478 |
gcataaaattaaaataggacaaagaagttgaagaccgacctctttatcttagtgggtgaggaggtaggtaatttcaagtaaatatttgctcaaagaaaag |
34996379 |
T |
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| Q |
412 |
gattttaggtactgaaatctaagttgatgaatctaatacatctttaggttggccaatttgtgtcatgcagtatgt |
486 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34996378 |
gattttaggtactgaaatctaagttgatgaatctaatacatctttaggttggccaatttgtgtcatgcagtatgt |
34996304 |
T |
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