View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20554_low_6 (Length: 468)

Name: NF20554_low_6
Description: NF20554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20554_low_6
NF20554_low_6
[»] chr6 (8 HSPs)
chr6 (314-398)||(10008192-10008276)
chr6 (354-398)||(2613382-2613426)
chr6 (314-395)||(10252965-10253046)
chr6 (309-398)||(19418589-19418678)
chr6 (357-395)||(17454006-17454044)
chr6 (354-395)||(2398047-2398088)
chr6 (325-378)||(4803165-4803218)
chr6 (356-395)||(1397068-1397108)
[»] chr7 (14 HSPs)
chr7 (338-395)||(18037883-18037940)
chr7 (338-399)||(23080654-23080715)
chr7 (314-395)||(16979941-16980022)
chr7 (327-395)||(11740394-11740462)
chr7 (338-398)||(15967872-15967932)
chr7 (328-394)||(45907068-45907134)
chr7 (329-394)||(5544982-5545046)
chr7 (359-400)||(5871239-5871280)
chr7 (357-398)||(8896628-8896669)
chr7 (314-399)||(24937831-24937915)
chr7 (357-398)||(34993158-34993199)
chr7 (333-394)||(41434719-41434780)
chr7 (347-395)||(22555737-22555785)
chr7 (359-395)||(47445389-47445425)
[»] chr8 (11 HSPs)
chr8 (328-398)||(39065564-39065634)
chr8 (314-395)||(43917586-43917667)
chr8 (341-384)||(34678251-34678294)
chr8 (340-398)||(20821915-20821973)
chr8 (340-398)||(40607324-40607381)
chr8 (338-395)||(3347544-3347600)
chr8 (314-398)||(10451897-10451982)
chr8 (314-395)||(18131191-18131271)
chr8 (314-394)||(10029161-10029241)
chr8 (358-394)||(12201835-12201871)
chr8 (358-394)||(12446263-12446299)
[»] chr5 (10 HSPs)
chr5 (314-395)||(6102828-6102908)
chr5 (325-394)||(21052662-21052731)
chr5 (356-398)||(30293853-30293895)
chr5 (333-394)||(11320143-11320204)
chr5 (319-395)||(12036341-12036416)
chr5 (308-395)||(16802021-16802107)
chr5 (325-395)||(14863346-14863416)
chr5 (357-395)||(30840631-30840669)
chr5 (325-394)||(2611183-2611252)
chr5 (325-378)||(7609590-7609643)
[»] chr4 (12 HSPs)
chr4 (314-395)||(53142780-53142861)
chr4 (356-395)||(44190260-44190299)
chr4 (357-395)||(39810736-39810774)
chr4 (327-399)||(54248993-54249065)
chr4 (356-399)||(35395350-35395393)
chr4 (337-395)||(4860139-4860197)
chr4 (348-398)||(32651955-32652005)
chr4 (357-394)||(31861462-31861499)
chr4 (314-395)||(55090780-55090860)
chr4 (357-393)||(2824851-2824887)
chr4 (327-399)||(3319279-3319351)
chr4 (338-394)||(16341136-16341192)
[»] chr3 (5 HSPs)
chr3 (341-403)||(4490806-4490868)
chr3 (357-398)||(29032454-29032495)
chr3 (314-394)||(15671151-15671230)
chr3 (307-395)||(1711957-1712045)
chr3 (327-395)||(54801363-54801431)
[»] chr2 (8 HSPs)
chr2 (357-399)||(18717892-18717934)
chr2 (324-398)||(43131789-43131863)
chr2 (357-395)||(4978785-4978823)
chr2 (357-395)||(4996693-4996731)
chr2 (314-395)||(1870527-1870607)
chr2 (341-398)||(30905369-30905425)
chr2 (315-399)||(27896463-27896547)
chr2 (354-390)||(29868271-29868307)
[»] scaffold0299 (1 HSPs)
scaffold0299 (314-398)||(18046-18131)
[»] chr1 (4 HSPs)
chr1 (339-398)||(31160751-31160809)
chr1 (327-398)||(33148161-33148232)
chr1 (340-398)||(39238856-39238914)
chr1 (333-394)||(26855861-26855921)
[»] scaffold0117 (1 HSPs)
scaffold0117 (325-395)||(16863-16933)
[»] scaffold0079 (1 HSPs)
scaffold0079 (338-394)||(51669-51725)


Alignment Details
Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 314 - 398
Target Start/End: Original strand, 10008192 - 10008276
Alignment:
Q  314 ttggttaagaaaccaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttttaa 398  Q
    ||||||||| ||||||||||||| | ||||||||||||  || |||||||||||||||||||||||||||   ||||||||||||    
T  10008192 ttggttaagcaaccaaaagaagtaagtttttattaaaaagtggtgtaattattacttgatcaaaagtaaccgtttatatttttaa 10008276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 2613426 - 2613382
Alignment:
Q  354 tgatgtaattattacttgatcaaaagtaacaacttatatttttaa 398  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||    
T  2613426 tgatgaaattattacttgatcaaaagtagcaacttatatttttaa 2613382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 395
Target Start/End: Original strand, 10252965 - 10253046
Alignment:
Q  314 ttggttaagaaaccaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    ||||||||| ||||||||||||| |  ||||||||||| |||||||||| |||| ||  |||||| |||||  |||||||||    
T  10252965 ttggttaagcaaccaaaagaagtaagattttattaaaaaatgatgtaataattagttagtcaaaaataacagtttatatttt 10253046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 398
Target Start/End: Original strand, 19418589 - 19418678
Alignment:
Q  309 gggtgttggttaagaaaccaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttttaa 398  Q
    |||| ||||||||| | ||||||||||| |  |||||||||||  ||||||||| ||||  || ||||||||||||  ||||||||||||    
T  19418589 gggtattggttaagcatccaaaagaagtaagattttattaaaaagtgatgtaataattagctggtcaaaagtaacagtttatatttttaa 19418678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 17454044 - 17454006
Alignment:
Q  357 tgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  17454044 tgtaattattacgtgatcaaaagtaacatcttatatttt 17454006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 395
Target Start/End: Original strand, 2398047 - 2398088
Alignment:
Q  354 tgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    ||||||||||||||||| ||||||||| | ||||||||||||    
T  2398047 tgatgtaattattacttaatcaaaagtcaaaacttatatttt 2398088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 378
Target Start/End: Original strand, 4803165 - 4803218
Alignment:
Q  325 accaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaa 378  Q
    |||||||||||| |||||||| |||||  | |||||||||||||||||| ||||    
T  4803165 accaaaagaagtaaatttttactaaaaagtaatgtaattattacttgataaaaa 4803218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 395
Target Start/End: Original strand, 1397068 - 1397108
Alignment:
Q  356 atgtaattattacttgatcaaaagtaac-aacttatatttt 395  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  1397068 atgtaattattatttgatcaaaagtaacaaacttatatttt 1397108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 395
Target Start/End: Complemental strand, 18037940 - 18037883
Alignment:
Q  338 aatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    |||||||||||||| | ||||||||||||| ||||||||||||||||| |||||||||    
T  18037940 aatttttattaaaaaacgatgtaattattatttgatcaaaagtaacaatttatatttt 18037883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 399
Target Start/End: Complemental strand, 23080715 - 23080654
Alignment:
Q  338 aatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttttaaa 399  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||| ||||||||||||||    
T  23080715 aatttttatgaaaaaattatgtaatcattacttgatcaaaagtaacatcttatatttttaaa 23080654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 395
Target Start/End: Original strand, 16979941 - 16980022
Alignment:
Q  314 ttggttaagaaaccaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    ||||||||| | |||||| |||| ||||||||| ||||  |  ||| ||||||||| |||||||||||||| ||||||||||    
T  16979941 ttggttaagcatccaaaacaagtaaatttttatgaaaaagttgtgtgattattactcgatcaaaagtaacatcttatatttt 16980022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 395
Target Start/End: Complemental strand, 11740462 - 11740394
Alignment:
Q  327 caaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    |||||||||| || |||||||||||  || |||||| |||| ||||||||||||||||  |||||||||    
T  11740462 caaaagaagtaaaattttattaaaaagtggtgtaataattagttgatcaaaagtaacagtttatatttt 11740394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 398
Target Start/End: Complemental strand, 15967932 - 15967872
Alignment:
Q  338 aatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttttaa 398  Q
    ||||| ||| ||||| || ||||||||||||| ||| |||| |||||||||||||||||||    
T  15967932 aatttgtataaaaagttggtgtaattattactagattaaaaataacaacttatatttttaa 15967872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 394
Target Start/End: Complemental strand, 45907134 - 45907068
Alignment:
Q  328 aaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatattt 394  Q
    ||||||||| | ||||||||||||  | |||||||||||||||||| |||||| |||  ||||||||    
T  45907134 aaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatattt 45907068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 394
Target Start/End: Complemental strand, 5545046 - 5544982
Alignment:
Q  329 aaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatattt 394  Q
    |||||||| || || ||||||||| ||||||||| |||||||||||||||| || | |||||||||    
T  5545046 aaagaagtgaaattctattaaaag-tgatgtaataattacttgatcaaaagcaaaatcttatattt 5544982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 400
Target Start/End: Original strand, 5871239 - 5871280
Alignment:
Q  359 taattattacttgatcaaaagtaacaacttatatttttaaac 400  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  5871239 taattattacttgattaaacgtaacaacttatattttgaaac 5871280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 398
Target Start/End: Complemental strand, 8896669 - 8896628
Alignment:
Q  357 tgtaattattacttgatcaaaagtaacaacttatatttttaa 398  Q
    |||||| ||||| ||||||||||||||| |||||||||||||    
T  8896669 tgtaatcattacctgatcaaaagtaacatcttatatttttaa 8896628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 399
Target Start/End: Original strand, 24937831 - 24937915
Alignment:
Q  314 ttggttaagaaaccaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttttaaa 399  Q
    ||||||||| |||||||| |||| | ||||||| ||||| || |||||||||||||| || |||||| | ||  ||||||||||||    
T  24937831 ttggttaaggaaccaaaataagtaactttttataaaaag-tggtgtaattattacttaattaaaagtcaaaatctatatttttaaa 24937915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 398
Target Start/End: Complemental strand, 34993199 - 34993158
Alignment:
Q  357 tgtaattattacttgatcaaaagtaacaacttatatttttaa 398  Q
    ||||||||||| || ||||||||||||| |||||||||||||    
T  34993199 tgtaattattattttatcaaaagtaacatcttatatttttaa 34993158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 394
Target Start/End: Original strand, 41434719 - 41434780
Alignment:
Q  333 aagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatattt 394  Q
    |||| |||||||||||||| || |||||||||||| ||||| |||||| |||  ||||||||    
T  41434719 aagtaaatttttattaaaaaataatgtaattattatttgataaaaagtgacagtttatattt 41434780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 22555737 - 22555785
Alignment:
Q  347 taaaagatgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    ||||| ||| |||||||||||||||||||||| | | ||||||||||||    
T  22555737 taaaaaatgttgtaattattacttgatcaaaaatcaaaacttatatttt 22555785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 47445425 - 47445389
Alignment:
Q  359 taattattacttgatcaaaagtaacaacttatatttt 395  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  47445425 taattattacttcatcaaaagtaaaaacttatatttt 47445389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 328 - 398
Target Start/End: Complemental strand, 39065634 - 39065564
Alignment:
Q  328 aaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttttaa 398  Q
    ||||||||| |||||||||||||| || |||| ||||||||||||| |||||| |||  ||||||||||||    
T  39065634 aaaagaagtaaatttttattaaaaaataatgtcattattacttgataaaaagtgacagtttatatttttaa 39065564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 395
Target Start/End: Original strand, 43917586 - 43917667
Alignment:
Q  314 ttggttaagaaaccaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    ||||||||| | |||||| |||| ||||||||| |||| ||  ||||||||||| ||||| |||||||||  ||||||||||    
T  43917586 ttggttaagcatccaaaacaagtaaatttttataaaaaaattgtgtaattattatttgattaaaagtaacgccttatatttt 43917667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 34678294 - 34678251
Alignment:
Q  341 ttttattaaaagatgatgtaattattacttgatcaaaagtaaca 384  Q
    ||||| ||||| || |||||||||||||||||||||||||||||    
T  34678294 ttttaataaaaaattatgtaattattacttgatcaaaagtaaca 34678251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 20821915 - 20821973
Alignment:
Q  340 tttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttttaa 398  Q
    ||||||||||||  | ||||||||||||||| || |||||| |||| ||||||||||||    
T  20821915 tttttattaaaaagtaatgtaattattacttaataaaaagtgacaatttatatttttaa 20821973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 40607324 - 40607381
Alignment:
Q  340 tttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttttaa 398  Q
    |||||||||||||  | |||||||||||||| ||||||||| | |||||||||||||||    
T  40607324 tttttattaaaagtag-tgtaattattacttaatcaaaagtcaaaacttatatttttaa 40607381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 395
Target Start/End: Complemental strand, 3347600 - 3347544
Alignment:
Q  338 aatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    ||||||||| ||||| || |||||||||||||| || |||||||||| ||||||||||    
T  3347600 aatttttatgaaaagttg-tgtaattattactttattaaaagtaacatcttatatttt 3347544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 398
Target Start/End: Original strand, 10451897 - 10451982
Alignment:
Q  314 ttggttaagaaaccaaaagaagttaatttttattaaaagatgatgtaa-ttattacttgatcaaaagtaacaacttatatttttaa 398  Q
    ||||||||| ||| |||| |||| | |||||  ||||| ||| ||||| ||||||||| ||||||||| | |||||||||||||||    
T  10451897 ttggttaagcaactaaaacaagtaatttttttataaaaaatggtgtaaattattacttaatcaaaagtcaaaacttatatttttaa 10451982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 395
Target Start/End: Original strand, 18131191 - 18131271
Alignment:
Q  314 ttggttaagaaaccaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    ||||||||| |||||||| |||| | ||||||||||||| |  |||||||||||||| ||||  ||| | ||||||||||||    
T  18131191 ttggttaagcaaccaaaacaagtaactttttattaaaag-tagtgtaattattacttaatcagtagtcaaaacttatatttt 18131271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 394
Target Start/End: Original strand, 10029161 - 10029241
Alignment:
Q  314 ttggttaagaaaccaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatattt 394  Q
    ||||||||| | |||||  |||| ||||||||| ||||  |  | |||| ||||||||||||||||||||| |||||||||    
T  10029161 ttggttaagcatccaaatcaagtaaatttttatgaaaaagttgtataatcattacttgatcaaaagtaacatcttatattt 10029241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 394
Target Start/End: Original strand, 12201835 - 12201871
Alignment:
Q  358 gtaattattacttgatcaaaagtaacaacttatattt 394  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  12201835 gtaattaatacttgatcaaaagtaacagcttatattt 12201871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 394
Target Start/End: Original strand, 12446263 - 12446299
Alignment:
Q  358 gtaattattacttgatcaaaagtaacaacttatattt 394  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  12446263 gtaattaatacttgatcaaaagtaacagcttatattt 12446299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 395
Target Start/End: Original strand, 6102828 - 6102908
Alignment:
Q  314 ttggttaagaaaccaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    ||||||||| |||||||| |||| | ||||||||||||| |  |||||||||||||| ||||||||| | ||||||||||||    
T  6102828 ttggttaagcaaccaaaataagtaactttttattaaaag-tattgtaattattacttaatcaaaagtcaaaacttatatttt 6102908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 394
Target Start/End: Complemental strand, 21052731 - 21052662
Alignment:
Q  325 accaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatattt 394  Q
    |||||||||||| | |||||||||||| || |||||||||||||||||| |||||| |||  ||||||||    
T  21052731 accaaaagaagtaagtttttattaaaaaatcatgtaattattacttgataaaaagtgacagtttatattt 21052662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 30293895 - 30293853
Alignment:
Q  356 atgtaattattacttgatcaaaagtaacaacttatatttttaa 398  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  30293895 atgtaatcattacttgatcaaaagtaacatcttatatttttaa 30293853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 394
Target Start/End: Original strand, 11320143 - 11320204
Alignment:
Q  333 aagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatattt 394  Q
    |||||||||||||||||||  | |||||||||||||||||| |||||| |||  ||||||||    
T  11320143 aagttaatttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatattt 11320204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 395
Target Start/End: Complemental strand, 12036416 - 12036341
Alignment:
Q  319 taagaaaccaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    |||| |||||||| || | | ||||||||||||| | ||||||||||||||| ||||||||| | ||||||||||||    
T  12036416 taagtaaccaaaataaataactttttattaaaag-taatgtaattattacttaatcaaaagtcaaaacttatatttt 12036341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 395
Target Start/End: Original strand, 16802021 - 16802107
Alignment:
Q  308 agggtgttggttaagaaaccaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    ||||| ||||||||| |||||||| || | | ||||||| ||||| | ||||||||||||||| ||||||||| | || |||||||||    
T  16802021 agggtattggttaagcaaccaaaacaaataactttttataaaaag-taatgtaattattacttaatcaaaagtcaaaatttatatttt 16802107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 14863346 - 14863416
Alignment:
Q  325 accaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    ||||||| |||| | ||||||||||||  | |||||||||||||||||| |||||| |||  |||||||||    
T  14863346 accaaaaaaagtaagtttttattaaaaattaatgtaattattacttgataaaaagtgacagtttatatttt 14863416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 30840669 - 30840631
Alignment:
Q  357 tgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  30840669 tgtaatcattacttgatcaaaagtaacatcttatatttt 30840631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 394
Target Start/End: Complemental strand, 2611252 - 2611183
Alignment:
Q  325 accaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatattt 394  Q
    |||||| ||||| | ||||||||||||  | ||||||||||||||| || |||||| ||| |||||||||    
T  2611252 accaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatattt 2611183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 7609643 - 7609590
Alignment:
Q  325 accaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaa 378  Q
    |||||||||||| | ||||||||||||  | |||||||||||||||||| ||||    
T  7609643 accaaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaa 7609590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 395
Target Start/End: Original strand, 53142780 - 53142861
Alignment:
Q  314 ttggttaagaaaccaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    ||||||||| |||| ||| || | | ||||||| |||| |||||||||||||||||| ||||||||| | ||||||||||||    
T  53142780 ttggttaagcaaccgaaacaaataactttttataaaaaaatgatgtaattattacttaatcaaaagttaaaacttatatttt 53142861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 395
Target Start/End: Original strand, 44190260 - 44190299
Alignment:
Q  356 atgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  44190260 atgtaattattacttgatcaaaagtaacatcttatatttt 44190299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 39810774 - 39810736
Alignment:
Q  357 tgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  39810774 tgtaattattacttgatcaaaagtaacatcttatatttt 39810736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 399
Target Start/End: Original strand, 54248993 - 54249065
Alignment:
Q  327 caaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttttaaa 399  Q
    |||||||||| | |||||||||||| ||  ||||||||| ||||||| |||| |||||  |||||||||||||    
T  54248993 caaaagaagtaagtttttattaaaaaatattgtaattatcacttgataaaaaataacagtttatatttttaaa 54249065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 399
Target Start/End: Complemental strand, 35395393 - 35395350
Alignment:
Q  356 atgtaattattacttgatcaaaagtaacaacttatatttttaaa 399  Q
    |||||||||||| ||||| |||||||||| ||||||||||||||    
T  35395393 atgtaattattatttgattaaaagtaacatcttatatttttaaa 35395350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 395
Target Start/End: Original strand, 4860139 - 4860197
Alignment:
Q  337 taatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    ||||||||  ||||| | |||||||||||||||| ||||||||| | ||||||||||||    
T  4860139 taattttttataaaaaaggatgtaattattacttaatcaaaagtcaaaacttatatttt 4860197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 398
Target Start/End: Complemental strand, 32652005 - 32651955
Alignment:
Q  348 aaaagatgatgtaattattacttgatcaaaagtaacaacttatatttttaa 398  Q
    |||||||||||||||||||||||  |||||||| | || ||||||||||||    
T  32652005 aaaagatgatgtaattattacttattcaaaagttaaaatttatatttttaa 32651955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Complemental strand, 31861499 - 31861462
Alignment:
Q  357 tgtaattattacttgatcaaaagtaacaacttatattt 394  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  31861499 tgtaatcattacttgatcaaaagtaacatcttatattt 31861462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 395
Target Start/End: Original strand, 55090780 - 55090860
Alignment:
Q  314 ttggttaagaaaccaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    ||||||||| ||| |||| |||| | ||||||| ||||| || ||||||||| |||| ||||||||| | ||||||||||||    
T  55090780 ttggttaagcaactaaaacaagtaactttttataaaaagttg-tgtaattataacttaatcaaaagtcaaaacttatatttt 55090860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 2824887 - 2824851
Alignment:
Q  357 tgtaattattacttgatcaaaagtaacaacttatatt 393  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  2824887 tgtaatcattacttgatcaaaagtaacatcttatatt 2824851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 399
Target Start/End: Complemental strand, 3319351 - 3319279
Alignment:
Q  327 caaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttttaaa 399  Q
    |||||||| | ||||||||||||||| | || ||||||||| ||||| |||| | |||  |||||||||||||    
T  3319351 caaaagaaataaatttttattaaaaggtaatataattattatttgatgaaaaatgacagtttatatttttaaa 3319279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 394
Target Start/End: Complemental strand, 16341192 - 16341136
Alignment:
Q  338 aatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatattt 394  Q
    ||||||||| |||| || ||||||| ||||||| |||||||||||||  ||||||||    
T  16341192 aatttttatgaaaaaattatgtaatcattacttaatcaaaagtaacattttatattt 16341136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 403
Target Start/End: Original strand, 4490806 - 4490868
Alignment:
Q  341 ttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttttaaacaaa 403  Q
    ||||||||||||||  ||||||||||| || ||||||||||| || ||||||||||| |||||    
T  4490806 ttttattaaaagatagtgtaattattattttatcaaaagtaaaaatttatatttttagacaaa 4490868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 29032454 - 29032495
Alignment:
Q  357 tgtaattattacttgatcaaaagtaacaacttatatttttaa 398  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  29032454 tgtaatcattacttgatcaaaagtaacatcttatatttttaa 29032495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 394
Target Start/End: Complemental strand, 15671230 - 15671151
Alignment:
Q  314 ttggttaagaaaccaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatattt 394  Q
    ||||||||||| ||||| ||||| | ||||||||||||  | |||||||||||||||||| |||||| |||  ||||||||    
T  15671230 ttggttaagaa-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatattt 15671151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 395
Target Start/End: Complemental strand, 1712045 - 1711957
Alignment:
Q  307 aagggtgttggttaagaaaccaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    |||||| ||||||||  ||| |||| |||| |||||||| ||||| ||  | ||||||||||||  ||||| |||||| ||||||||||    
T  1712045 aagggtattggttaaacaactaaaataagtaaatttttaataaaaaatagtataattattacttagtcaaatgtaacatcttatatttt 1711957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 395
Target Start/End: Complemental strand, 54801431 - 54801363
Alignment:
Q  327 caaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    ||||| |||| | ||||||| |||| ||  |||||||||||||| | ||||||||||| ||||||||||    
T  54801431 caaaataagtaagtttttatgaaaaaattgtgtaattattactttagcaaaagtaacatcttatatttt 54801363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 18717892 - 18717934
Alignment:
Q  357 tgtaattattacttgatcaaaagtaacaacttatatttttaaa 399  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  18717892 tgtaatcattacttgatcaaaagtaacatcttatatttttaaa 18717934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 398
Target Start/End: Complemental strand, 43131863 - 43131789
Alignment:
Q  324 aaccaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttttaa 398  Q
    |||||||| |||| | ||||||| ||||| |  |||||||||||||||||||||||||  |||||| ||||||||    
T  43131863 aaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaa 43131789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 4978823 - 4978785
Alignment:
Q  357 tgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  4978823 tgtaatcattacttgatcaaaagtaacatcttatatttt 4978785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 4996731 - 4996693
Alignment:
Q  357 tgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  4996731 tgtaatcattacttgatcaaaagtaacatcttatatttt 4996693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 395
Target Start/End: Complemental strand, 1870607 - 1870527
Alignment:
Q  314 ttggttaagaaaccaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    ||||||||| ||| |||| |||| | ||||||| |||| ||| |||||||||||||| ||||||||| | | ||||||||||    
T  1870607 ttggttaagcaacaaaaacaagtaactttttataaaaaaatg-tgtaattattacttaatcaaaagtcaaagcttatatttt 1870527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 30905369 - 30905425
Alignment:
Q  341 ttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttttaa 398  Q
    |||||||||||| || ||||||||||| |||||||  | |||||||||||||||||||    
T  30905369 ttttattaaaagttg-tgtaattattatttgatcaccaataacaacttatatttttaa 30905425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 399
Target Start/End: Original strand, 27896463 - 27896547
Alignment:
Q  315 tggttaagaaaccaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttttaaa 399  Q
    |||||||  |||||||| |||| | |||| |||||||  |  |||||||||||||  ||||||||||||| ||||||||| ||||    
T  27896463 tggttaaacaaccaaaataagtaagttttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaa 27896547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 29868271 - 29868307
Alignment:
Q  354 tgatgtaattattacttgatcaaaagtaacaacttat 390  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  29868271 tgatgtaattattatttgataaaaagtaacaacttat 29868307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 398
Target Start/End: Complemental strand, 18131 - 18046
Alignment:
Q  314 ttggttaagaaaccaaaagaagttaatttttattaaaaga-tgatgtaattattacttgatcaaaagtaacaacttatatttttaa 398  Q
    ||||||||| |||||||| |||| | ||||||| |||| | |  |||||||||||||| ||||||||| | |||||||||||||||    
T  18131 ttggttaagcaaccaaaacaagtaactttttataaaaaaagttgtgtaattattacttaatcaaaagtcaaaacttatatttttaa 18046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 31160751 - 31160809
Alignment:
Q  339 atttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttttaa 398  Q
    |||||||| ||||| ||||||||||||||||| ||||||||| | || ||||||||||||    
T  31160751 atttttataaaaag-tgatgtaattattacttaatcaaaagtcaaaatttatatttttaa 31160809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 398
Target Start/End: Complemental strand, 33148232 - 33148161
Alignment:
Q  327 caaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttttaa 398  Q
    ||||| |||| | ||||||| |||| ||  |||||| |||||||||||||||||| || |||||||||||||    
T  33148232 caaaacaagtaagtttttatgaaaaaattgtgtaatcattacttgatcaaaagtagcatcttatatttttaa 33148161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 39238856 - 39238914
Alignment:
Q  340 tttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttttaa 398  Q
    |||||| ||||| ||  |||||| |||||||||||||| ||||||||||| ||||||||    
T  39238856 tttttaataaaaaatagtgtaatcattacttgatcaaatgtaacaacttacatttttaa 39238914  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 394
Target Start/End: Complemental strand, 26855921 - 26855861
Alignment:
Q  333 aagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatattt 394  Q
    |||| ||||||||||||||| | |||||||||||||||||| |||||| |||  ||||||||    
T  26855921 aagtaaatttttattaaaag-taatgtaattattacttgataaaaagtgacagattatattt 26855861  T

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Target: scaffold0117 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 395
Target Start/End: Complemental strand, 16933 - 16863
Alignment:
Q  325 accaaaagaagttaatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatatttt 395  Q
    |||||||||| | | |||||||||||| || || ||||||||||||||| |||||| |||  |||||||||    
T  16933 accaaaagaaataagtttttattaaaaaattatataattattacttgataaaaagtgacagtttatatttt 16863  T

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Target: scaffold0079 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 51669 - 51725
Alignment:
Q  338 aatttttattaaaagatgatgtaattattacttgatcaaaagtaacaacttatattt 394  Q
    ||||||||| |||| || ||||||| ||||||| |||||||||||||  ||||||||    
T  51669 aatttttatgaaaaaattatgtaatcattacttaatcaaaagtaacattttatattt 51725  T

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