View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20554_low_8 (Length: 389)

Name: NF20554_low_8
Description: NF20554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20554_low_8
NF20554_low_8
[»] scaffold1122 (1 HSPs)
scaffold1122 (14-371)||(966-1328)
[»] chr5 (4 HSPs)
chr5 (14-371)||(12822734-12823096)
chr5 (102-315)||(18750510-18750722)
chr5 (120-171)||(20858103-20858154)
chr5 (122-183)||(29518535-29518595)
[»] chr1 (7 HSPs)
chr1 (128-318)||(13202677-13202868)
chr1 (120-266)||(15724171-15724318)
chr1 (100-256)||(25534612-25534769)
chr1 (123-266)||(27451761-27451905)
chr1 (157-267)||(13221685-13221795)
chr1 (134-193)||(30095853-30095912)
chr1 (239-309)||(10825051-10825121)
[»] chr6 (9 HSPs)
chr6 (84-273)||(15549529-15549718)
chr6 (157-273)||(33656029-33656145)
chr6 (97-205)||(33652764-33652872)
chr6 (120-315)||(2360828-2361024)
chr6 (123-266)||(26296579-26296725)
chr6 (120-205)||(34388371-34388455)
chr6 (127-171)||(26271442-26271486)
chr6 (120-166)||(16526760-16526806)
chr6 (237-273)||(20426960-20426996)
[»] chr3 (4 HSPs)
chr3 (110-267)||(25781617-25781774)
chr3 (98-315)||(14183271-14183485)
chr3 (120-193)||(32197308-32197381)
chr3 (228-273)||(47015989-47016034)
[»] chr4 (7 HSPs)
chr4 (100-192)||(8011724-8011816)
chr4 (120-218)||(50394147-50394245)
chr4 (157-273)||(12286071-12286189)
chr4 (120-182)||(48747351-48747413)
chr4 (120-205)||(21556075-21556160)
chr4 (238-315)||(12462451-12462528)
chr4 (83-131)||(9014788-9014836)
[»] chr7 (5 HSPs)
chr7 (134-267)||(18775742-18775878)
chr7 (110-267)||(5779448-5779609)
chr7 (81-222)||(16305552-16305692)
chr7 (122-183)||(12866661-12866722)
chr7 (81-144)||(16245404-16245466)
[»] chr8 (2 HSPs)
chr8 (119-265)||(24570102-24570250)
chr8 (120-218)||(31014180-31014277)
[»] scaffold0330 (1 HSPs)
scaffold0330 (120-183)||(1836-1899)
[»] chr2 (2 HSPs)
chr2 (120-198)||(29986451-29986529)
chr2 (119-171)||(12496273-12496325)


Alignment Details
Target: scaffold1122 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: scaffold1122
Description:

Target: scaffold1122; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 371
Target Start/End: Original strand, 966 - 1328
Alignment:
Q  14 agatatttcaaacgagctacaataaacagtgagttctgctacatcgcttggggaagctaagagaccaagtgatggacaatcttggcaagtgtacccaatc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  966 agatatttcaaacgagctacaataaacagtgagttctgctacatcgcttggggaagctaaaagaccaagtgatggacaatcttggcaagtgtatccaatc 1065  T
Q  114 attcataagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttatta-----gaacaaaaaatagaa 208  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| ||||||||||     |||| ||||||||||    
T  1066 attcacaagtaataaagtagtaagtaagaccgtctccacaagaattttcgtttcaactcggcaactagcattacttattatattagaacgaaaaatagaa 1165  T
Q  209 acaaataaattaaataagtgcagtaaatttgggggagtttgcaagttttatttgattgcggaaaatagatgtgagttagtaacctaatttaattgcagaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || ||||||||||||||| ||||||||||||||    
T  1166 acaaataaattaaataagtgcagtaaatttgggggagtttgcaagttttatttaattgcgcaaaatggaggtgagttagtaacctgatttaattgcagaa 1265  T
Q  309 ttttagcagcgcggttgggattcttcgcatccaccctactttttgttggattaaagacaagtc 371  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1266 ttttagcagcgcggttaggattcttcgcatccaccctactttttgttggattaaagacaagtc 1328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 371
Target Start/End: Complemental strand, 12823096 - 12822734
Alignment:
Q  14 agatatttcaaacgagctacaataaacagtgagttctgctacatcgcttggggaagctaagagaccaagtgatggacaatcttggcaagtgtacccaatc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  12823096 agatatttcaaacgagctacaataaacagtgagttctgctacatcgcttggggaagctaaaagaccaagtgatggacaatcttggcaagtgtatccaatc 12822997  T
Q  114 attcataagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttatta-----gaacaaaaaatagaa 208  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| || |||||| ||||||||||     |||||||||||||||    
T  12822996 attcacaagtaataaagtagtaagtaagaccgtctccacaagaattttcgtttcaactcggcgactagcattacttattatattagaacaaaaaatagaa 12822897  T
Q  209 acaaataaattaaataagtgcagtaaatttgggggagtttgcaagttttatttgattgcggaaaatagatgtgagttagtaacctaatttaattgcagaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || ||||||||||||||| ||||||||||||||    
T  12822896 acaaataaattaaataagtgcagtaaatttgggggagtttgcaagttttatttaattgcgcaaaatggaggtgagttagtaacctgatttaattgcagaa 12822797  T
Q  309 ttttagcagcgcggttgggattcttcgcatccaccctactttttgttggattaaagacaagtc 371  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12822796 ttttagcagcgcggttaggattcttcgcatccaccctactttttgttggattaaagacaagtc 12822734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 102 - 315
Target Start/End: Original strand, 18750510 - 18750722
Alignment:
Q  102 gtgtacccaatcattcataagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttattagaacaaaa 201  Q
    ||||||| |||| || | |||||||||||||||||||||||||||||||||| | ||  || |||||||||   ||||||| || ||||||| |||| ||    
T  18750510 gtgtaccaaatctttaacaagtaataaagtagtaagtaagatcgtctccacacggataatcatttcaactcgaaaactagcattgcttattaaaacataa 18750609  T
Q  202 aatagaaacaaataaattaaataagtgcagtaaatttgggggagtttgcaagttttatttgattgcggaaaatagatgtgagttagtaacctaatttaat 301  Q
    |||| ||||||||||| ||||||| |||||||||  ||||||||| ||  ||||||||||||||||| |||  || ||  | ||||| ||||  ||| ||    
T  18750610 aataaaaacaaataaaataaataaatgcagtaaa-ctgggggagtctgagagttttatttgattgcgcaaagcagttgcaaattagttacctggtttgat 18750708  T
Q  302 tgcagaattttagc 315  Q
    ||||||||||||||    
T  18750709 tgcagaattttagc 18750722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 20858154 - 20858103
Alignment:
Q  120 aagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaact 171  Q
    ||||||||||||||||||||| ||| |||||| |||||||||||||| ||||    
T  20858154 aagtaataaagtagtaagtaaaatcatctccataagaattgtcgttttaact 20858103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 29518535 - 29518595
Alignment:
Q  122 gtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagct 183  Q
    ||||||||||||||||||| |||||||||||| | | ||||||||| ||  |||||||||||    
T  29518535 gtaataaagtagtaagtaaaatcgtctccacatgga-tgtcgtttcgacgaagcaactagct 29518595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 128 - 318
Target Start/End: Complemental strand, 13202868 - 13202677
Alignment:
Q  128 aagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttattagaacaaaaaatagaaacaaataaattaaataagt 227  Q
    ||||| ||| ||||||| ||| |||| | ||||||||| |||||||||||||||  || |||||||||||| |||||| |||||| |||| ||||||| |    
T  13202868 aagtaataaataagatcatcttcacatggattgtcgttgcaactcagcaactagtgtttcttattagaacagaaaataaaaacaactaaaataaataaat 13202769  T
Q  228 gcagtaaatttg-ggggagtttgcaagttttatttgattgcggaaaatagatgtgagttagtaacctaatttaattgcagaattttagcagc 318  Q
    | |||||||||| ||||||||| ||||||||||||||||||| |||| | | || | ||||||| ||  ||| |||| ||||||||||||||    
T  13202768 gtagtaaatttggggggagttttcaagttttatttgattgcgtaaaacataagtaaattagtaatctggtttgattgtagaattttagcagc 13202677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 120 - 266
Target Start/End: Complemental strand, 15724318 - 15724171
Alignment:
Q  120 aagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttattagaacaaaaaatagaaa-caaataaat 218  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| ||||||||   |||| || | ||  ||||| |||| |||||| ||| |||||||||    
T  15724318 aagtaataaagtagtaagtaaaatcgtctccgcaagaattgtcatttcaactagccaacaagttataaatattaaaacagaaaataaaaagcaaataaat 15724219  T
Q  219 taaataagtgcagtaaatttgggggagtttgcaagttttatttgattg 266  Q
    |||||||    ||||| || |||||||||||||||||| |||||||||    
T  15724218 taaataaaaagagtaagttggggggagtttgcaagtttgatttgattg 15724171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 100 - 256
Target Start/End: Complemental strand, 25534769 - 25534612
Alignment:
Q  100 aagtgtacccaatcattca-taagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttattagaaca 198  Q
    |||||| || ||||||||| |||||||||||||  ||||||||||||| | | |||  ||| ||||||||| || ||||||||| |||||||||||| ||    
T  25534769 aagtgtgccaaatcattcactaagtaataaagtgataagtaagatcgtatgctcaatgattatcgtttcaattcggcaactagcgttacttattagagca 25534670  T
Q  199 aaaaatagaaacaaataaattaaa-taagtgcagtaaatttgggggagtttgcaagttt 256  Q
     |||||| ||||||||||| ||||  ||||| |||||||| |||||  |||||||||||    
T  25534669 taaaataaaaacaaataaaataaacaaagtg-agtaaattaggggggttttgcaagttt 25534612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 266
Target Start/End: Complemental strand, 27451905 - 27451761
Alignment:
Q  123 taataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttattagaacaaaaaat-agaaacaaataaattaa 221  Q
    |||||||||||||||||| |||||||||| ||| |||||||||||||||  |||||||    ||||||||| || | ||||| |||| ||||||| ||||    
T  27451905 taataaagtagtaagtaaaatcgtctccataaggattgtcgtttcaactaggcaacta-taatacttattaaaatagaaaatgagaagcaaataacttaa 27451807  T
Q  222 ataagtgc-agtaaatttgggggagtttgcaagttttatttgattg 266  Q
    ||||  || |||||||| ||| ||||| |||||||| |||||||||    
T  27451806 ataaaagcaagtaaattggggcgagttcgcaagtttgatttgattg 27451761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 267
Target Start/End: Complemental strand, 13221795 - 13221685
Alignment:
Q  157 attgtcgtttcaactcagcaactagctttacttattagaacaaaaaatagaaacaaataaattaaataagtgcagtaaatttgggg-gagtttgcaagtt 255  Q
    ||||||||||||||||  ||||||   | |||||||| |||| |||||| |||||| ||||| || |||  | ||||||||||| | |||||||||||||    
T  13221795 attgtcgtttcaactcgacaactaatataacttattaaaacagaaaataaaaacaattaaat-aattaaaagtagtaaatttggagagagtttgcaagtt 13221697  T
Q  256 ttatttgattgc 267  Q
    ||||||||||||    
T  13221696 ttatttgattgc 13221685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 30095853 - 30095912
Alignment:
Q  134 taagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttatta 193  Q
    ||||||| |||||||||||| | | |||| ||||||||| ||||||||| ||||||||||    
T  30095853 taagtaacatcgtctccacagggactgtcatttcaactcggcaactagcgttacttatta 30095912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 309
Target Start/End: Original strand, 10825051 - 10825121
Alignment:
Q  239 gggggagtttgcaagttttatttgattgcggaaaatagatgtgagttagtaacctaatttaattgcagaat 309  Q
    ||||||||||| |||||||||||||||||| |||| |   |||| |||| ||||| |||| ||||||||||    
T  10825051 gggggagtttgtaagttttatttgattgcgcaaaacaatagtgaattagcaacctgatttgattgcagaat 10825121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 84 - 273
Target Start/End: Original strand, 15549529 - 15549718
Alignment:
Q  84 gatggacaatcttggcaagtgtacccaatcattcataagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagct 183  Q
    |||| ||||| ||| |||||||||| |||| |||| ||||||||| ||  ||| ||||||| |||||||| | || ||| |||||||| ||||||||||     
T  15549529 gatgaacaattttgacaagtgtaccaaatcgttcacaagtaataatgtgataaataagatcatctccacatggatcgtcatttcaacttagcaactagca 15549628  T
Q  184 ttacttattagaacaaaaaatagaaacaaataaattaaataagtgcagtaaatttgggggagtttgcaagttttatttgattgcggaaaa 273  Q
    ||||||| ||||||| |||| | |||||| ||||||||||||    ||||||||   |||  ||||||||||||||||||||||| ||||    
T  15549629 ttacttaatagaacagaaaacaaaaacaattaaattaaataaaacgagtaaattaaaggggttttgcaagttttatttgattgcgcaaaa 15549718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 157 - 273
Target Start/End: Complemental strand, 33656145 - 33656029
Alignment:
Q  157 attgtcgtttcaactcagcaactagctttacttattagaacaaaaaatagaaacaaataaattaaataagtgcagtaaatttgggggagtttgcaagttt 256  Q
    |||||||||||||||||||||||||| |||||| |||||||| |||||| || ||| ||||||||||||    |||||||| |||||  |||||||||||    
T  33656145 attgtcgtttcaactcagcaactagcgttacttgttagaacagaaaataaaaccaactaaattaaataaagcgagtaaattaggggggttttgcaagttt 33656046  T
Q  257 tatttgattgcggaaaa 273  Q
     |||||||||| |||||    
T  33656045 aatttgattgcagaaaa 33656029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 97 - 205
Target Start/End: Complemental strand, 33652872 - 33652764
Alignment:
Q  97 ggcaagtgtacccaatcattcataagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttattagaa 196  Q
    |||||||||| | ||||||||| |||||  || ||| ||||||||||||||| || |   |||||||||||||||| ||||||||| |||||||||| ||    
T  33652872 ggcaagtgtatcaaatcattcacaagtatcaatgtaataagtaagatcgtcttcatagagattgtcgtttcaactcggcaactagcattacttattataa 33652773  T
Q  197 caaaaaata 205  Q
    || ||||||    
T  33652772 cagaaaata 33652764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 120 - 315
Target Start/End: Complemental strand, 2361024 - 2360828
Alignment:
Q  120 aagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttattagaacaaaaaatagaaacaaataaatt 219  Q
    ||||||||||||||||||||||| | |||| || |   ||||||||| ||||| | ||||||| ||| |||||| ||||| ||||| ||    ||||| |    
T  2361024 aagtaataaagtagtaagtaagagcatctctactaaggttgtcgttttaactcggaaactagcgttatttattaaaacaacaaataaaatgctataaaat 2360925  T
Q  220 aaataagtgc-agtaaatttgggggagtttgcaagttttatttgattgcggaaaatagatgtgagttagtaacctaatttaattgcagaattttagc 315  Q
    | ||||  || |||||||||| || ||||||||| ||| |||| |||||| |||  || ||||| | || ||||| |||| ||| ||||||||||||    
T  2360924 atataaaagcgagtaaatttgaggaagtttgcaaatttgatttaattgcgcaaagcagttgtgattgagcaacctgatttgattccagaattttagc 2360828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 266
Target Start/End: Original strand, 26296579 - 26296725
Alignment:
Q  123 taataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttattagaacaaaaaatagaaa-caaataaattaa 221  Q
    ||||||| |||||| ||| | ||||||||||   |||||||||||||||    |||||||| || | |||| |||| |||||| ||| ||||||||||||    
T  26296579 taataaaatagtaaataaaaccgtctccacatagattgtcgtttcaactataaaactagctatattgattataacataaaataaaaaccaaataaattaa 26296678  T
Q  222 ataagtgc-agtaaatttggggg-agtttgcaagttttatttgattg 266  Q
    || |  || |||||||| ||||| ||||||||||||| |||||||||    
T  26296679 attaaagcaagtaaattggggggaagtttgcaagtttgatttgattg 26296725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 34388371 - 34388455
Alignment:
Q  120 aagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttattagaacaaaaaata 205  Q
    ||||||||||||| ||||||| || ||||| || ||||||||||||||||||  ||||||| ||  |||||||| ||||| |||||    
T  34388371 aagtaataaagtaataagtaaaat-gtctctacgagaattgtcgtttcaactaggcaactacctaaacttattaaaacaataaata 34388455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 26271486 - 26271442
Alignment:
Q  127 aaagtagtaagtaagatcgtctccacaagaattgtcgtttcaact 171  Q
    |||||||||||||| |||||||||||||| || ||||||||||||    
T  26271486 aaagtagtaagtaaaatcgtctccacaaggatggtcgtttcaact 26271442  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 16526760 - 16526806
Alignment:
Q  120 aagtaataaagtagtaagtaagatcgtctccacaagaattgtcgttt 166  Q
    ||||||||||||||||||||| || |||| |||| ||||||||||||    
T  16526760 aagtaataaagtagtaagtaaaattgtcttcacatgaattgtcgttt 16526806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 20426996 - 20426960
Alignment:
Q  237 ttgggggagtttgcaagttttatttgattgcggaaaa 273  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  20426996 ttgggggagtttgcaagtttgatttgattgcgcaaaa 20426960  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 267
Target Start/End: Complemental strand, 25781774 - 25781617
Alignment:
Q  110 aatcattcataagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttactta-ttagaacaaaaaatagaa 208  Q
    |||||||||||||||||||| |  |||||||||||||||||||| ||||| || |||||||||  ||||||||  |||||| |||||||| ||| || ||    
T  25781774 aatcattcataagtaataaattgataagtaagatcgtctccacatgaattatcatttcaactctacaactagcgctacttatttagaacagaaatta-aa 25781676  T
Q  209 acaaataaattaaataagtgcagtaaatttgggggagtttgcaagttttatttgattgc 267  Q
      ||||||| |||||||  || ||||||| |||||| ||  ||||||||||||||||||    
T  25781675 taaaataaaataaataaaagcggtaaattagggggatttcacaagttttatttgattgc 25781617  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 98 - 315
Target Start/End: Complemental strand, 14183485 - 14183271
Alignment:
Q  98 gcaagtgtacccaatcattcataagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttattagaac 197  Q
    ||||| ||||| |||| |||  ||||||||||||  ||||||  ||| ||| || |  |||||||||||||||||  |||||||| ||||||||| |||     
T  14183485 gcaagcgtaccaaatcgttcgcaagtaataaagtgataagtagaatcatcttcaaataaattgtcgtttcaactcgacaactagcgttacttatttgaaa 14183386  T
Q  198 aaaaaatagaaacaaataaattaaataagtgcagtaaatttgggggagtttgcaagttttatttgattgcggaaaatagatgtgagttagtaacctaatt 297  Q
    | |||||| |||||| ||||||||||||   || |||| | |||||   |||||||||| ||||||||||| |||  ||  |||| |||||||||| |||    
T  14183385 agaaaataaaaacaattaaattaaataaagccaataaactaggggg---ttgcaagtttgatttgattgcgcaaagcagtagtgaattagtaacctgatt 14183289  T
Q  298 taattgcagaattttagc 315  Q
    | |||||||||| |||||    
T  14183288 tgattgcagaatgttagc 14183271  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 32197308 - 32197381
Alignment:
Q  120 aagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttatta 193  Q
    ||||||||||||||||||||| ||  |||| |||  ||||||| ||||||||  ||||||||||  ||||||||    
T  32197308 aagtaataaagtagtaagtaaaatgatctctacataaattgtcatttcaactaggcaactagctaaacttatta 32197381  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 47015989 - 47016034
Alignment:
Q  228 gcagtaaatttgggggagtttgcaagttttatttgattgcggaaaa 273  Q
    |||||||||| ||||||||||| |||||| ||||||||||| ||||    
T  47015989 gcagtaaattggggggagtttgtaagtttgatttgattgcgcaaaa 47016034  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 100 - 192
Target Start/End: Complemental strand, 8011816 - 8011724
Alignment:
Q  100 aagtgtacccaatcattcataagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttatt 192  Q
    ||||||||| ||||||||| |||  ||||||||||||||||||||||||| ||| | |||||| |||||||||| |||||||  |||||||||    
T  8011816 aagtgtaccaaatcattcacaagagataaagtagtaagtaagatcgtctctacatgtattgtcatttcaactcatcaactagtgttacttatt 8011724  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 50394245 - 50394147
Alignment:
Q  120 aagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttattagaacaaaaaatagaaacaaataaat 218  Q
    |||||||||| |||||||||| || ||||||||| | |||||||||||||||   |||||||||  ||||||||  |||| ||||| || |||||||||    
T  50394245 aagtaataaattagtaagtaaaattgtctccacatgcattgtcgtttcaactagacaactagctaaacttattaatacaataaataaaagcaaataaat 50394147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 273
Target Start/End: Original strand, 12286071 - 12286189
Alignment:
Q  157 attgtcgtttcaactcagcaactagctttacttattagaacaaaaaatagaaa-caaataaattaaataagtgca-gtaaatttgggggagtttgcaagt 254  Q
    ||||||||||||| |  ||||||| |||| ||||||| ||||  || || ||| ||||| ||| ||||||  ||| ||||||||||||||||||| | ||    
T  12286071 attgtcgtttcaattaggcaactacctttccttattaaaacaggaagtaaaaagcaaattaatcaaataaaagcaagtaaatttgggggagtttgaatgt 12286170  T
Q  255 tttatttgattgcggaaaa 273  Q
    |||||||||||||| ||||    
T  12286171 tttatttgattgcgcaaaa 12286189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 48747351 - 48747413
Alignment:
Q  120 aagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagc 182  Q
    |||||||| ||| |||||||| |||||||||||||  |||||||||||||||  |||||||||    
T  48747351 aagtaatatagtggtaagtaaaatcgtctccacaactattgtcgtttcaactaggcaactagc 48747413  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 21556075 - 21556160
Alignment:
Q  120 aagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttattagaacaaaaaata 205  Q
    ||||||||||||||||||||| |||||||| | ||  | ||| |||||||||  | |||||| | ||||||||| |||||||||||    
T  21556075 aagtaataaagtagtaagtaaaatcgtctctataaagactgttgtttcaactaggaaactagatatacttattaaaacaaaaaata 21556160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 12462528 - 12462451
Alignment:
Q  238 tgggggagtttgcaagttttatttgattgcggaaaatagatgtgagttagtaacctaatttaattgcagaattttagc 315  Q
    |||||| |||||||||||| |||||||| || |||   | ||||||||||||||||  ||||| |||||||| |||||    
T  12462528 tgggggtgtttgcaagtttgatttgatttcgcaaagccgttgtgagttagtaacctggtttaaatgcagaatgttagc 12462451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 9014788 - 9014836
Alignment:
Q  83 tgatggacaatcttggcaagtgtacccaatcattcataagtaataaagt 131  Q
    ||||||||||| |||||||||| |||  |||||||| ||||||||||||    
T  9014788 tgatggacaattttggcaagtgcaccagatcattcacaagtaataaagt 9014836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 134 - 267
Target Start/End: Complemental strand, 18775878 - 18775742
Alignment:
Q  134 taagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttattagaacaaaaaatagaaacaaataaattaaataagtgc-agt 232  Q
    ||||||||||| |||||||||  |||||||||||||||  | ||||||||  |||||||| ||||||| ||| || | |||||| |||||||  || |||    
T  18775878 taagtaagatcatctccacaaagattgtcgtttcaactaggaaactagctagacttattaaaacaaaatataaaagcgaataaagtaaataaaagcgagt 18775779  T
Q  233 aaatttgggg--gagtttgcaagttttatttgattgc 267  Q
    ||||||||||  | |||||||||||| ||||||||||    
T  18775778 aaatttgggggtgggtttgcaagtttgatttgattgc 18775742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 267
Target Start/End: Original strand, 5779448 - 5779609
Alignment:
Q  110 aatcattcataagtaataaagtagtaagtaagatcgtctccaca-agaattgtcgtttcaactcagcaactagctttactta-ttagaacaaaaaataga 207  Q
    ||||||||| |||||||||||||||||||||||| |||||  ||   ||||||| |||||| || ||||||| | ||||||| ||| |||| |||||| |    
T  5779448 aatcattcacaagtaataaagtagtaagtaagattgtctctgcagttaattgtcatttcaaatcggcaactaacgttacttatttaaaacagaaaataaa 5779547  T
Q  208 aacaaataaattaaataagtgcagtaaatt--tgggggagtttgcaagttttatttgattgc 267  Q
    |  ||||||| |||||||    |||| |||   |||||||||||||||||||||||||||||    
T  5779548 acaaaataaaataaataaagctagtacattaaggggggagtttgcaagttttatttgattgc 5779609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 16305552 - 16305692
Alignment:
Q  81 agtgatggacaatcttggcaagtgtacccaatcattcataagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaacta 180  Q
    ||||||||||||| ||| |||||||||| |||| | || ||||||||||||||||||||||| | ||| |||| ||||    |||||||||| |||| ||    
T  16305552 agtgatggacaattttgccaagtgtaccaaatcct-cacaagtaataaagtagtaagtaagaccatcttcacaggaatctctgtttcaactcggcaaata 16305650  T
Q  181 gctttactta-ttagaacaaaaaatagaaacaaataaattaaa 222  Q
    ||  |||||| ||| ||||||||| | ||||||||||| ||||    
T  16305651 gcgctacttatttaaaacaaaaaaca-aaacaaataaaataaa 16305692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 12866661 - 12866722
Alignment:
Q  122 gtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagct 183  Q
    ||||||||||||||||||| ||||||| |||| ||||| |||||||||||  ||||||||||    
T  12866661 gtaataaagtagtaagtaaaatcgtcttcacatgaattatcgtttcaactaggcaactagct 12866722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 16245466 - 16245404
Alignment:
Q  81 agtgatggacaatcttggcaagtgtacccaatcattcataagtaataaagtagtaagtaagatc 144  Q
    ||||||||||||| ||| |||||||||| |||| | || |||||||||||||||||||||||||    
T  16245466 agtgatggacaattttgccaagtgtaccaaatcct-cacaagtaataaagtagtaagtaagatc 16245404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 265
Target Start/End: Complemental strand, 24570250 - 24570102
Alignment:
Q  119 taagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttattagaacaaaaaatagaaacaaataaat 218  Q
    |||||||||||||||||||||| ||| |||||||||| |||||  |||||||   ||||||||||| |||||||  |||  |||||| || |||||||      
T  24570250 taagtaataaagtagtaagtaaaatcatctccacaaggattgttatttcaaccacgcaactagcttaacttattgaaaccgaaaataaaagcaaataacg 24570151  T
Q  219 taaat-aagtgcagtaaatttgg-gggagtttgcaagttttatttgatt 265  Q
    ||||| ||    ||||||||||| ||||||||||||| |||||||||||    
T  24570150 taaataaaaaagagtaaatttggagggagtttgcaaggtttatttgatt 24570102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 31014180 - 31014277
Alignment:
Q  120 aagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttattagaacaaaaaatagaaacaaataaat 218  Q
    ||||||||||||  |||||||||| ||||| ||||  || || ||||||||||  |||||| | |||||||||| |||| |||||| ||||||||||||    
T  31014180 aagtaataaagtgataagtaagattgtctcaacaaagat-gttgtttcaactcgacaactaacgttacttattaaaacagaaaataaaaacaaataaat 31014277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 1899 - 1836
Alignment:
Q  120 aagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagct 183  Q
    ||||||||||||||||||||| |||||||| || ||||||||||||||||||  ||||||||||    
T  1899 aagtaataaagtagtaagtaaaatcgtctctacgagaattgtcgtttcaactaggcaactagct 1836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 29986529 - 29986451
Alignment:
Q  120 aagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaactcagcaactagctttacttattagaaca 198  Q
    ||||||||||||||||| |||  ||||||| | ||| |||||| ||||||||  ||||||||||  |||||||| ||||    
T  29986529 aagtaataaagtagtaattaaactcgtctcgataaggattgtcatttcaactaggcaactagctcaacttattaaaaca 29986451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 12496273 - 12496325
Alignment:
Q  119 taagtaataaagtagtaagtaagatcgtctccacaagaattgtcgtttcaact 171  Q
    |||||||||||||  |||||||||||||||  |||  ||||||||||||||||    
T  12496273 taagtaataaagtgataagtaagatcgtctttacataaattgtcgtttcaact 12496325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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