View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20555_high_16 (Length: 349)
Name: NF20555_high_16
Description: NF20555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20555_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 29585994 - 29586307
Alignment:
| Q |
20 |
aaagatagaagcaagaatgacagaaagtgggtgcatcatatcccattggatgacacaattgaattgcagtttgattgaaaccaattctttggaataaaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29585994 |
aaagatagaagcaagaatgacagaaagtgggtgcatcatatcccattggatgacacaattgaattgcagtttgattgaaaccaataatttggaataaaca |
29586093 |
T |
|
| Q |
120 |
agttcacagccaacaaggtcaataatttcgacatttatggacaatacaagatacaataatgtgagattagcacggcttgccaatctaatgcaggccatcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29586094 |
agttcacagccaacaaggtcaataattttgacatttatggacaatacaagatacaataatgtgagattagcacggcttgccaatctaatgcaggccatcc |
29586193 |
T |
|
| Q |
220 |
tcagaaaatgaccttgaatacaaaaggccttatttgattgacgaataaggcatatatgcaatctagcatctgaaccaattcaatgtcatgagatcctgaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29586194 |
tcagaaaatgaccttgaatacaaaaggccttatttgattgacgaataaggcatttatgcaatctagcatctgaaccaattcaatgtcatgagatcctgaa |
29586293 |
T |
|
| Q |
320 |
agcggacatctgtg |
333 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
29586294 |
agaggacatctgtg |
29586307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University