View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20555_high_18 (Length: 297)
Name: NF20555_high_18
Description: NF20555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20555_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 17110509 - 17110288
Alignment:
| Q |
19 |
cacagatcagatagtgttagaacagcaactctagtccaaaagattaaagataggaaaaaacgcaaacaatgaacacacgaagtttggtaactaattaagc |
118 |
Q |
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| T |
17110509 |
cacagatcagatagtgttagaacagcaactctagtccaaaagattaaagataggaaaaaacgcaaacaatgaacacacgacgtttggtaactaattaagc |
17110410 |
T |
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| Q |
119 |
tcggccaattgtgtgtacgtctccaactgtattgatttatattattacccacttgggatttacagggtacaaatttgtatttaaacactgcatttcagat |
218 |
Q |
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| T |
17110409 |
tcggccaattgcgtgtacgtctccaactgtattgatttatattattacccacttaggatttacagggtacaaatttgtatttaaacactgcatttcagat |
17110310 |
T |
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| Q |
219 |
tacaacataaatcccactgatc |
240 |
Q |
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| T |
17110309 |
tacaacataaatcccactgatc |
17110288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 17126221 - 17126147
Alignment:
| Q |
20 |
acagatcagatagtgttagaacagcaactctagtccaaaagattaaagataggaaaaaacgcaaacaatgaacaca |
95 |
Q |
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| T |
17126221 |
acagatcagatagtgttagaacatcaaccctagttcaaaagagtaaaaat-tcaaaaaacgcaaacaatgaacaca |
17126147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 17110266 - 17110228
Alignment:
| Q |
239 |
tcattttaaagtgggtccagttcaagtaaatactatttg |
277 |
Q |
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| T |
17110266 |
tcattttaaagtgggtccagttcaagtaaatactatttg |
17110228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 35052265 - 35052192
Alignment:
| Q |
33 |
tgttagaacagcaactctagtccaaaagattaaagataggaaaaaacgcaaacaatgaacacacgaagtttggtaa |
108 |
Q |
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| T |
35052265 |
tgttagaacagcaa-tccggttcaaaagaataaagatacgaaaaa-cgcaaacaatgaacacacgttgtttggtaa |
35052192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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