View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20555_high_20 (Length: 281)
Name: NF20555_high_20
Description: NF20555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20555_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 266
Target Start/End: Complemental strand, 6358300 - 6358041
Alignment:
| Q |
5 |
gctcctcaatgtctcaagttcgattctccttaatgtctatttaggtggccaagttcagtttcttcagtaaaaatatttatgtcttgccattgtaatattt |
104 |
Q |
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| T |
6358300 |
gctcctcaatgtctcaagttcgattctcctcaatgtct--ttaggtgggcaagttcagcttcttcagtaaaaatatttatgtcttgccattgtaatattt |
6358203 |
T |
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| Q |
105 |
aagtgtacaatattagtcatatgtacatacatcagcagcttaattttttatttggctggtgtgtggtaatattaactatcttccaactaaatatgttctg |
204 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6358202 |
aagtgtacaatattagtcatatgtgcatacatcagcagcttaattttttatttggctggtgtgtggtaatattaactatcttccaactaaatatgttctg |
6358103 |
T |
|
| Q |
205 |
caacgtcgaggtgttaagatttctgttggaattgcaatatacatgttccaacaatttcttct |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6358102 |
caacgtcgaggtgttaagatttctgttggaattgcaatatacatgttccaacaatttcttct |
6358041 |
T |
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