View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20555_high_23 (Length: 239)
Name: NF20555_high_23
Description: NF20555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20555_high_23 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 9338908 - 9338687
Alignment:
| Q |
18 |
cctagcccattatagaagtagatttccttctcttttgtaaatacatcatgcttgcaaaggggagataggagacatagtaataaacagataattgagttac |
117 |
Q |
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| T |
9338908 |
cctagcccattatagaagtagatttccttctcttttgtaaatacatcatgcttgcaaaggggagataggagacatagtaataaacagataattgtgttac |
9338809 |
T |
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| Q |
118 |
cgaaatgagttgaggttttggagcatannnnnnngcagatagaagcatgtttctaaatgtcgcgaagagtcgagacttcagataacaaggtttttggtgc |
217 |
Q |
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| T |
9338808 |
cgaaatgagttgaggtttcggagcatatttttttgcagatagaagcatgtttctaaatgtcgcgaagagtcgagacttcagataacaaggtttttggtgc |
9338709 |
T |
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| Q |
218 |
tgaattgcttaagggattagct |
239 |
Q |
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|||||||| ||||||||||||| |
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| T |
9338708 |
tgaattgcgtaagggattagct |
9338687 |
T |
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