View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20555_high_24 (Length: 231)
Name: NF20555_high_24
Description: NF20555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20555_high_24 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold1787 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 44728290 - 44728520
Alignment:
| Q |
1 |
catctcacaagcgatacgtatctgggtttgctgcaatcgactgaacgaaactggaataataaacactacatttcttattggttgtttcagttcagtttca |
100 |
Q |
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| T |
44728290 |
catctcacaagcgatacgtatccgggtttgctgcaatcgactgaacgaaactggaataataaacactacatttcttataggttgtttcagttcagtttca |
44728389 |
T |
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| Q |
101 |
gccatttcttttaaattcaccagaaagtttccaaggagttctactgcagtggttgatttgcacactttgttcacaaatgcagctacaaaaggacgaatct |
200 |
Q |
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| T |
44728390 |
gccatttcttttaaattcaccagaaagtttccaaggagttctactgcagtggttgatttgcacactttgttcacaaatgcagctacaaaaggacgaatct |
44728489 |
T |
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| Q |
201 |
taatgtccaaagtgtgcatcagaaatgggaa |
231 |
Q |
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| T |
44728490 |
taatgtccaaagtgtgcatcagaaatgggaa |
44728520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 42927314 - 42927523
Alignment:
| Q |
19 |
tatctgggtttgctgcaatcgactgaacgaaactggaataataaacactacatttcttattggttgtttcagttcagtttcagccatttcttttaaattc |
118 |
Q |
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| T |
42927314 |
tatctgggttcgccgcaatcgagtgaatgaaactggaacagtaaacactacctttcttataggtattttcacccgaatttcaaccgaaaactttaatttc |
42927413 |
T |
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| Q |
119 |
accagaaagtttccaaggagttctactgcagtggttgatttgcacactttgttcacaaatgcagctacaaaaggacgaatcttaatgtccaaagtgtgca |
218 |
Q |
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| T |
42927414 |
accagaaattttccaaggagttctactgcagtggtggatctacacgctttattcgcaattgcagcaataaaaggacgaaccttaatgtccaaagtgtgca |
42927513 |
T |
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| Q |
219 |
tcagaaatgg |
228 |
Q |
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| T |
42927514 |
tcagaaatgg |
42927523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 47879940 - 47880004
Alignment:
| Q |
40 |
actgaacgaaactggaataataaacactacatttcttattggttgtttcagttcagtttcagcca |
104 |
Q |
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| T |
47879940 |
actgaaggaaactggaactgtaaacactacatttcttatccgtcgtttcagttgagtttcagcca |
47880004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1787 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1787
Description:
Target: scaffold1787; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 1349 - 1279
Alignment:
| Q |
161 |
cacactttgttcacaaatgcagctacaaaaggacgaatcttaatgtccaaagtgtgcatcagaaatgggaa |
231 |
Q |
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| T |
1349 |
cacactctgatcacaaatgcggcaataaaagggtgaaccttaatgtccaagctgtgcatcagaaatgggaa |
1279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 21282672 - 21282753
Alignment:
| Q |
60 |
taaacactacatttcttattggttgtttcagttcagtttcagccatttcttttaaattcaccagaaagtttccaaggagttc |
141 |
Q |
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| T |
21282672 |
taaacagtacattttttataggttgttttggttgaatttcagccattactattaattccaccagaaattttccaatgagttc |
21282753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 39241401 - 39241337
Alignment:
| Q |
37 |
tcgactgaacgaaactggaataataaacactacatttcttattggttgtttcagttcagtttcag |
101 |
Q |
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| T |
39241401 |
tcgactgaatgaaactggaactgtaagcacaacatttcttattggtcgtttcagatgagtttcag |
39241337 |
T |
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