View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20555_high_6 (Length: 486)
Name: NF20555_high_6
Description: NF20555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20555_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 23 - 474
Target Start/End: Complemental strand, 42538458 - 42538007
Alignment:
| Q |
23 |
cggaccccatttatcattggacttgtaactcttgaccatatatatgtatgtattacatatattgagttaggcgtttacaataaaatttgaagtcaatgtt |
122 |
Q |
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| T |
42538458 |
cggaacccatttatcattggacttgtaactcttgaccatatatatgtatgtatgacatacattgagttaggcgtatacaataaaatttgaagtcaatgtt |
42538359 |
T |
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| Q |
123 |
ttgaactctctagctaaaatgcaaccaccatgttctggaggaacatcatcacaaccctgcttcaatggttgttttccatctccatttcttgcctctgaga |
222 |
Q |
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| T |
42538358 |
ttgaactctctagctaaaatgcaaccaccatgttctggaggaacatcatcacaaccctgcttcaatggttgttttccatctccatttcttgcctctgaga |
42538259 |
T |
|
| Q |
223 |
attcccatgataacacttccaattcaaatagtgtcagtaaaaatgatgacttagcctcagccacatcctcaagtctttaccccaacacacatttcacaaa |
322 |
Q |
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| T |
42538258 |
attcccatgataacacttccaattcaaatagtgtcagtagaattgatgacttatcctcagccacatcttcaagtctttaccccaacacacatttcacaaa |
42538159 |
T |
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| Q |
323 |
ccatgaatgtctcccacttttacaagactcatatgataacttcatcaaatcattccctcaattttccacaacttctcaagtagatcaaattcgagatcaa |
422 |
Q |
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| T |
42538158 |
ccatgaatctctcccacttttacaagactcatataataacttcatcaaatcattccctcaattttccacaacttctcaagtagatcaaattcgagatcaa |
42538059 |
T |
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| Q |
423 |
gaatatcaacacttgaataatctctccaatacatgttttgattacacaggtt |
474 |
Q |
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| T |
42538058 |
gaatatcaacacttgaataatctctccaatacatgttttgattacactggtt |
42538007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 42531448 - 42531365
Alignment:
| Q |
359 |
taacttcatcaaatcattccctcaattttccacaacttctcaagtagatcaaattcgagatcaagaatatcaacacttgaataa |
442 |
Q |
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| T |
42531448 |
taactttataaaatcattccctcaattttccacaacttctgaaatagatcaaattcgagcacaagaatatcaccacttgaataa |
42531365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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