View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20555_high_9 (Length: 414)
Name: NF20555_high_9
Description: NF20555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20555_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 42 - 401
Target Start/End: Complemental strand, 11133447 - 11133087
Alignment:
| Q |
42 |
aatagcatagtatatagaggacaaagagaaatacgacaaatatggtgcgtcggtgatgagaaccctggccaaccagcatgtcatcatgaattggttaaga |
141 |
Q |
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| T |
11133447 |
aatagcatagtatatagaggacaaagagaaatacgacaaatatggtgcgtcggtgatgagaaccctggccaaccagcatgtcatcatgaattggttaaga |
11133348 |
T |
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| Q |
142 |
ggccatcacggtcatgaaatttgaagtgggtgaaaaggatgcaccattatacaaataagcatgtagattaatcgatagtggcgaacatttgaggtttgat |
241 |
Q |
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| T |
11133347 |
ggccatcacggttatgaaatttgaagtgggtgaaaaggatgcaccattatacaaataagcatgtagattaatcgatagtggcaaacatttgaggtttgat |
11133248 |
T |
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| Q |
242 |
tggtgtgtcacgttttggatgttcttggccaaacaaagacatcaatgacccaagtgttagtaagcaaataattcactttaattgaactaataatactttt |
341 |
Q |
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| T |
11133247 |
tggtgtgtcacgttttggatgttcttggccaaacaaagacatcaatgacccacgtgttagtaagcaaataattcactttaattgaattaataatactttt |
11133148 |
T |
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| Q |
342 |
t-tccttggagggaattgaactaattgtatgttttagtctttttagagatgtaagtataat |
401 |
Q |
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| T |
11133147 |
tctccttggagggaattgaactaattgtatgttttagtctttttagagatgtaagtataat |
11133087 |
T |
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