View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20555_low_1 (Length: 648)
Name: NF20555_low_1
Description: NF20555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20555_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 466; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Complemental strand, 30401429 - 30400931
Alignment:
| Q |
18 |
aggatgactcagctgccccatgttg---atttttctctataataaaatcacatcacactaaattataaatatataaaaaagaaccatctattttgctaca |
114 |
Q |
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|||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30401429 |
aggatgacacagcttccccatgttgttgatttttctctataataaaatcacatcacactaaattataaatatataaaaaagaaccatctattttgctaca |
30401330 |
T |
|
| Q |
115 |
caagttatatgaaacagttttcccaacttcagaattcaactagttctcaagctttgagtaaacttttcaagtaacgtactcaccaaccattcactgggtt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30401329 |
caagttatatgaaacagttttcccaacttcagaattcaactagttctcaagctttgagtaaacttttcaagtaacgtactcaccaaccattcactgggtt |
30401230 |
T |
|
| Q |
215 |
cctggtggctcgcattgttaagcttcttcacagcaacagtcaaaccagaacctggtttagtggggcctaacgtgtgctcatcgatccacccctttacata |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30401229 |
cctggtggctcgcattgttaagcttcttcacagcaacagtcaaaccagaacctggtttagtggggcctaacgtgtgctcatcgatccacccctttacata |
30401130 |
T |
|
| Q |
315 |
aaactcatcttcggtcacttgactatctggaaccaagttccctgttgcagtttttaattcctttaatgtgaagcatttcaaagcccatgaagatcaggtg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30401129 |
aaactcatcttcggtcacttgactatctggaaccaagttccctgttgcagtttttaattcctttaatgtgaagcatttcaaagcccatgaag---aggtg |
30401033 |
T |
|
| Q |
415 |
gcattgctgattaaaccaatcatagtatcatcttctctcccatctacctttgaattcaaacctgtccatatcaaaataaaacatgaattaactatacaat |
514 |
Q |
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| T |
30401032 |
gcattgctgattaaaccaatcatagtatcatcttctctcccatctacctttgaattcaaacctgtccatatcaaaataaaacatgaattaactatacaat |
30400933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 30388916 - 30388647
Alignment:
| Q |
18 |
aggatgactcagctgccccatgttg---atttttctctataataaaatcacatcacactaaattataaatatataaaaaagaaccatctattttgctaca |
114 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30388916 |
aggatgactcagctgccccatgttgttgatttttctctataataaaatcacatcaaactaaattataaatatctaaaaaagaaccatctattttgctaca |
30388817 |
T |
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| Q |
115 |
caagttatatgaaaca---------------------gttttcccaacttcagaattcaactagttctcaagctttgagtaaacttttcaagtaacgtac |
193 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||| |
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| T |
30388816 |
gaagttatatgaaacaattttccaaaaataatttgatattttcccaacttcagaattcaactagttctcaagcttttggtaaaattttcgagtaacatac |
30388717 |
T |
|
| Q |
194 |
tcaccaaccattcactgggttcctggtggctcgcattgttaagcttcttcacagcaacagtcaaaccaga |
263 |
Q |
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| T |
30388716 |
tcaccaaccattcactgggttcctggtggctcacatggttaagcttcttcacagcaattgtaaaaccaga |
30388647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 506 - 648
Target Start/End: Original strand, 30400707 - 30400849
Alignment:
| Q |
506 |
ctatacaattcatatacttttaattattgagaataaatcttggatttaggtaagaagaccgttagttcagccaacgcaaaaaagttaccttatttcacaa |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30400707 |
ctatacaattcatatacttttaattattgagaataaatcttggatttaggtaagaagaccgttagttcagccaacgcaaaaaagttaccttatttcacga |
30400806 |
T |
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| Q |
606 |
gaatgtacttaggnnnnnnntgtagttcatttatatgattgca |
648 |
Q |
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||||||||||||| ||||||||||||||||||||||| |
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| T |
30400807 |
gaatgtacttaggaaaaaaatgtagttcatttatatgattgca |
30400849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 192 - 308
Target Start/End: Complemental strand, 30408440 - 30408324
Alignment:
| Q |
192 |
actcaccaaccattcactgggttcctggtggctcgcattgttaagcttcttcacagcaacagtcaaaccagaacctggtttagtggggcctaacgtgtgc |
291 |
Q |
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|||||||||||||||||| ||||||||| ||| ||||||||| | || ||||||||||| ||||||| ||||||||| || || || | ||||| |
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| T |
30408440 |
actcaccaaccattcactatgttcctggttgctttcattgttaaacatcatcacagcaacaacaaaaccagtacctggtttcgtaggagcttgcatgtgc |
30408341 |
T |
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| Q |
292 |
tcatcgatccacccctt |
308 |
Q |
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||||||||||||||||| |
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| T |
30408340 |
tcatcgatccacccctt |
30408324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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