View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20555_low_11 (Length: 411)
Name: NF20555_low_11
Description: NF20555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20555_low_11 |
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| [»] scaffold0415 (2 HSPs) |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 37 - 401
Target Start/End: Complemental strand, 40805147 - 40804793
Alignment:
| Q |
37 |
atcatgcccttataatggctttgataacggtctatggatcaatatgcggcttattgtagatacttcatactatgcaacaattcatttgaaggccctgatt |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40805147 |
atcatgcccttataatggctttgataacggtctatggatcaatatgcggcttattgtagatacttcatactatgcaacaattcatttgaaggcccttatt |
40805048 |
T |
|
| Q |
137 |
tcgaaaacttttcgcttttgtacactttttccattgtttgctgtcttgtaagttttgtgaagttttgtaattagtgtttggcttaagtttgtataaaaag |
236 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40805047 |
tcaaaaacttttcgcttttgtacactttttccattgtttgctgtcttgtaagtt----------ttgtaattagtgtttggcttaagtttgtataaaaag |
40804958 |
T |
|
| Q |
237 |
atcgtgagcttcatcggga-nnnnnnnnnnattttcactgagcaacatcaggatatgtaattagaaagatatgtttatgtatacatatatatattgttta |
335 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40804957 |
atcgtgagcttcatcgggatatttttttttattttcactgagcaacatcaggatatgtaattagagagatatgtttatgtatacatatatatattgttta |
40804858 |
T |
|
| Q |
336 |
caatgaaaaaagatagaattaattatatttttaatctttggtttggttaaaatttgagtttctgtg |
401 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40804857 |
caatg-aaaaagatagaattaattatatttttaatctttggtttggttaaaatttgagtttctgtg |
40804793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 28 - 397
Target Start/End: Complemental strand, 40817141 - 40816773
Alignment:
| Q |
28 |
ctggaacggatcatgcccttataatggctttgataacggtctatggatcaatatgcggcttattgtagatacttcatactatgcaacaattcatttgaag |
127 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||| |||| |||||||| | |||||| | |||||| ||| | | |||||||||||| |
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| T |
40817141 |
ctggaacggatcattcccttataatggctttgattacggtctacggattgatatgcggaaaaatgtagaaatttcatatgatgta-cgattcatttgaag |
40817043 |
T |
|
| Q |
128 |
gccctgatttcgaaaacttttcgcttttgtacactttttccattgtttgctgtcttgtaagttttgtgaagttttgtaattagtgtttggcttaagtttg |
227 |
Q |
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|| |||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| |||||| |||||| |||| |||||||| || | ||||| |
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| T |
40817042 |
gctctgattcagaaaacttttcgcttttgtacactttttccatcgtttgatgtcttgtaaattttgtaaagtttagtaactagtgtttagc-tcagttta |
40816944 |
T |
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| Q |
228 |
tataaaaagatcgtg----agcttcatcgggannnnnnnnnnattttcactgagcaacatcaggatatgtaattagaaagatatgtttatgtatacatat |
323 |
Q |
| |
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|||||||||||| || ||||||||| || ||||||||||| ||||||||| |||||||||| || ||||| |||||| || || |
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| T |
40816943 |
tataaaaagatcatgagctagcttcatcaagatctttttt---ttttcactgagtttcatcaggatctgtaattagagaggtatgtatatgtaaac--at |
40816849 |
T |
|
| Q |
324 |
atatattgtttacaatgaaa-aaagatagaattaattatatttttaatctttggttt-ggttaaaatttgagtttc |
397 |
Q |
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||||||||| | ||| |||| ||| |||||||||||| ||||||| ||||||||||| |||||||||||||||| |
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| T |
40816848 |
atatattgtatgcaaagaaataaatatagaattaattgtattttttatctttggtttacattaaaatttgagtttc |
40816773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 114 - 395
Target Start/End: Complemental strand, 40811878 - 40811608
Alignment:
| Q |
114 |
caattcatttgaaggccctgatttcgaaaacttttcgcttttgtacactttttccattgtttgctgtcttgtaagttttgtgaagttttgtaattagtgt |
213 |
Q |
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|||||||||| |||||||||||| | |||||||| |||||| |||||||||||||| || || |||||||||| ||||||| || |||||| |
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| T |
40811878 |
caattcattttaaggccctgattgggcaaactttttgcttttctacactttttccatcgtctgatgtcttgtaa---------agttttgcaactagtgt |
40811788 |
T |
|
| Q |
214 |
ttggcttaagtttgtataaaaagatcgtgagcttcatcgggannnnnnnnnnattttcactgagcaacatcaggatatgtaattagaaagatatgtttat |
313 |
Q |
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|| ||| | ||||||||||||||||| ||||||||||| ||| |||| |||||||| |||||||| |||||||| | |||||||| | |
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| T |
40811787 |
ttagctca-gtttgtataaaaagatcatgagcttcatcaggatcttctttt--tttttactgagcatcatcaggaactgtaattatagagatatgtacaa |
40811691 |
T |
|
| Q |
314 |
gtatacatatatatattgtttacaatgaaaaaagatagaattaattatatttttaatctttggtttg-gttaaaatttgagtt |
395 |
Q |
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||| ||||||||||||||| ||||| |||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |
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| T |
40811690 |
gtacacatatatatattgtatacaaagaaaaaagatagaattaattatatatttgatctttggtttgcgttaaaatttgagtt |
40811608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 28 - 184
Target Start/End: Complemental strand, 40806885 - 40806728
Alignment:
| Q |
28 |
ctggaacggatcatgcccttataatggctttgataacggtctatggatcaatatgcggcttattgtagatacttcatactat--gcaacaattcatttga |
125 |
Q |
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|||| ||||||||| | |||||||||||||||||||||||||| |||| |||||||| | ||||| || |||||||||| ||| |||||||||||| |
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| T |
40806885 |
ctggcacggatcattctcttataatggctttgataacggtctacggattgatatgcggtaaaatgtagttatttcatactatatgca-caattcatttga |
40806787 |
T |
|
| Q |
126 |
aggccctgatttcgaaaacttttcgcttttgtacactttttccattgtttgctgtcttg |
184 |
Q |
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|||| ||||| |||||||||| | |||||| ||| |||||||||||||| ||||||| |
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| T |
40806786 |
aggctatgattcggaaaactttttgattttgttcacattttccattgtttgttgtcttg |
40806728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 40825700 - 40825637
Alignment:
| Q |
35 |
ggatcatgcccttataatggctttgataacggtctatggatcaatatgcggcttattgtagata |
98 |
Q |
| |
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||||||| |||||||||| ||| |||| ||||||||||| | |||||||||||| |||||||| |
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| T |
40825700 |
ggatcattcccttataatcgctctgatcacggtctatggtttgatatgcggcttaatgtagata |
40825637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 40811975 - 40811922
Alignment:
| Q |
35 |
ggatcatgcccttataatggctttgataacggtctatggatcaatatgcggctt |
88 |
Q |
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|
||||||| ||||||| | ||||||||||||||| ||||||| ||||||||||| |
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| T |
40811975 |
ggatcattcccttattacggctttgataacggtatatggattgatatgcggctt |
40811922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 28 - 246
Target Start/End: Original strand, 15223 - 15439
Alignment:
| Q |
28 |
ctggaacggatcatgcccttataatggctttgataacggtctatggatcaatatgcggcttattgtagatacttcatactatgcaacaattcatttgaag |
127 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||| |||| |||||||| | |||||| | |||||| ||| | | |||||||||||| |
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| T |
15223 |
ctggaacggatcattcccttataatggctttgattacggtctacggattgatatgcggaaaaatgtagaaatttcatatgatgta-cgattcatttgaag |
15321 |
T |
|
| Q |
128 |
gccctgatttcgaaaacttttcgcttttgtacactttttccattgtttgctgtcttgtaagttttgtgaagttttgtaattagtgtttggcttaagtttg |
227 |
Q |
| |
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|| |||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| |||||| |||||| |||| |||||||| || | ||||| |
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| T |
15322 |
gctctgattcagaaaacttttcgcttttgtacactttttccatcgtttgatgtcttgtaaattttgtaaagtttagtaactagtgtttagc-tcagttta |
15420 |
T |
|
| Q |
228 |
tataaaaagatcgtgagct |
246 |
Q |
| |
|
|||||||||||| |||||| |
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| T |
15421 |
tataaaaagatcatgagct |
15439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 327
Target Start/End: Original strand, 15461 - 15521
Alignment:
| Q |
267 |
ttttcactgagcaacatcaggatatgtaattagaaagatatgtttatgtatacatatatat |
327 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| || ||||| |||||| |||||||||| |
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|
| T |
15461 |
ttttcactgagtttcatcaggatctgtaattagagaggtatgtatatgtaaacatatatat |
15521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 28 - 184
Target Start/End: Original strand, 7746 - 7903
Alignment:
| Q |
28 |
ctggaacggatcatgcccttataatggctttgataacggtctatggatcaatatgcggcttattgtagatacttcatactat--gcaacaattcatttga |
125 |
Q |
| |
|
|||| ||||||||| | |||||||||||||||||||||||||| |||| |||||||| | ||||| || |||||||||| ||| |||||||||||| |
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| T |
7746 |
ctggcacggatcattctcttataatggctttgataacggtctacggattgatatgcggtaaaatgtagttatttcatactatatgca-caattcatttga |
7844 |
T |
|
| Q |
126 |
aggccctgatttcgaaaacttttcgcttttgtacactttttccattgtttgctgtcttg |
184 |
Q |
| |
|
|||| ||||| |||||||||| | |||||| ||| |||||||||||||| ||||||| |
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|
| T |
7845 |
aggctatgattcggaaaactttttgattttgttcacattttccattgtttgttgtcttg |
7903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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