View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20555_low_12 (Length: 409)
Name: NF20555_low_12
Description: NF20555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20555_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 17110671 - 17111062
Alignment:
| Q |
1 |
ttgttattaaacatgaatgatatctttggactcctgttatgcatactgaagtgtgtagttacctggctaattggtgacatatgctattttaaactttaag |
100 |
Q |
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| T |
17110671 |
ttgttattaaacatgaatgatatctttggactcctgttatgcatactgaagtgtgtagttacctggctaattggtgacatatgctattttaaactttaag |
17110770 |
T |
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| Q |
101 |
caaatagatagaacactttgtacaactttattagatgacgtgatttgtttcttgagtttcttaaagaacattgagttttatagcagaattaatttcttgt |
200 |
Q |
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| T |
17110771 |
caaatagatagaacactttgtacaactttattagatgacgtgatttgttttttgagtttctaaaagaacattgagttttatagcagaattaatttcttgt |
17110870 |
T |
|
| Q |
201 |
tcaaatctgtcacaataaactattaatttccgcctcatgctgtcaactgtgtgtattattctcttcatgatgtgattatttcagaattagaaggaatgca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
17110871 |
tcaaatctgtcacaataaactattaatttccgcctcatgctgtcaactgtgtgtattattctcttcatgatgtgattatttcagaattaaaaggcatgca |
17110970 |
T |
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| Q |
301 |
taagctatttcatattgattgatgaatgctccatttgattttttcgcaatacaggttagaaggaaatccagtgagactttggtttgcttaaa |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17110971 |
taagctatttcatattgattgatgaatgctccatttgattttttcgcaatacaggttagaaggaaatccagtgagagtttggtttgcttaaa |
17111062 |
T |
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