View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20555_low_13 (Length: 391)
Name: NF20555_low_13
Description: NF20555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20555_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 30995214 - 30994842
Alignment:
| Q |
1 |
gttttgcttattagatggtggtgtgagccttgcagagcagattgtatttgggcgcctttgaagaagtccagctcagtttaaggcaatggctttctcttgg |
100 |
Q |
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| T |
30995214 |
gttttgcttattagatggtggtgtgagccttgcagagcagattgtatttgggcgcctttgaagcagtccagctcagtttaaggcagtggctttctcttgg |
30995115 |
T |
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| Q |
101 |
aatttgttttttaatagagtccaactacgtcaaatgttgcgaatagacatgtcttagatgtgaatacttcgataaattgtgatttttgtggttacgtaga |
200 |
Q |
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| T |
30995114 |
aatttgttttttaatagagtctaactcagtcaaatgttgcgaaaagacatgtcttagatgtgaatacttcgataagttgtgatttttgtggtttcgtaga |
30995015 |
T |
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| Q |
201 |
agaaacaacaatccaactatctttgcattgtgaggtggtttcaaagatttggctcaaggtgttgtgtttattagaaatgaatttcgtcaatcctcctaaa |
300 |
Q |
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| T |
30995014 |
agaaacaacaatccaactatctttgcattgtgaggtggtttcaaagatttggctcaaggtgttgtgtttattagaaatgaatttcgtcaatcctcctaaa |
30994915 |
T |
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| Q |
301 |
actatttgtgcatttagattgttgaacaaattatgcgggaaagaagaagcttaggcgtggtttgtggataatt |
373 |
Q |
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| T |
30994914 |
actatttgtgcatttagattgttgaacaaatgatgcgggaaagaagaagcttaggcgtggtttgtggataatt |
30994842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 324
Target Start/End: Original strand, 6384918 - 6385020
Alignment:
| Q |
221 |
ctttgcattgtgaggtggtttcaaagatttggctcaaggtgttgtgtttattagaaatgaatttcgtcaatcctcctaaaactatttgtgcatttagatt |
320 |
Q |
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| T |
6384918 |
ctttgcattgtgaagtggtttcaaggattttgctcaagttgtagtgttggttacaattgcacttagtcactgctcct-aatctatgtgtgcatttagatt |
6385016 |
T |
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| Q |
321 |
gttg |
324 |
Q |
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|||| |
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| T |
6385017 |
gttg |
6385020 |
T |
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