View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20555_low_18 (Length: 347)
Name: NF20555_low_18
Description: NF20555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20555_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 30400487 - 30400717
Alignment:
| Q |
11 |
catcatcaataacacactggcatgggtggctgcattagctcaagggtcaaaactgagaggaagagtcattcatataacggtaataaataacactgttatt |
110 |
Q |
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| T |
30400487 |
catcatcaataacacactggcatggatggctgcattagctcaagggtcaaaactgagaggaagagtcattcatataacggtaataaataacactgttatt |
30400586 |
T |
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| Q |
111 |
cacattttcatttcttaattaatgaccaatcttctgtatgtttgtgaataaattttgctacttggtatggaaatttgttttaaatttttgagggggtaat |
210 |
Q |
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| T |
30400587 |
cacattttcatttcttaattaatgaccaatcttgtgtatgtttgtgaataaattttgctacttggtatggaaatttgttttaaatttttgagggggtaat |
30400686 |
T |
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| Q |
211 |
ctgttgttacattctcgtctctatacaattc |
241 |
Q |
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| T |
30400687 |
ctgttgttacattcttgtctctatacaattc |
30400717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 231 - 347
Target Start/End: Complemental strand, 30400941 - 30400825
Alignment:
| Q |
231 |
ctatacaattctcttttacgctcataattttgttttttgaaaatgagtcggagactgtagaagaaaagaaattacagatttagtaacattattgcaatca |
330 |
Q |
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| T |
30400941 |
ctatacaattctcttttacgctcataattttgttttttgaaaatgagtcggagactatagaagaaaagaaattacagatttagtaacattattgcaatca |
30400842 |
T |
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| Q |
331 |
tataaatgaactacatt |
347 |
Q |
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| T |
30400841 |
tataaatgaactacatt |
30400825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 30388308 - 30388344
Alignment:
| Q |
93 |
ataaataacactgttattcacattttcatttcttaat |
129 |
Q |
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| T |
30388308 |
ataaataacattgttattcacattttcctttcttaat |
30388344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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