View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20555_low_24 (Length: 250)
Name: NF20555_low_24
Description: NF20555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20555_low_24 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 44728859 - 44728630
Alignment:
| Q |
21 |
tttggttgaaaactctcaacatttttgttattatcctttgaatgcaggatgacagaacctgcatctatcgaggaggaaaattcgccgccgcctcttcctg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44728859 |
tttggttgaaaactctcaacatttttgttattatcctttgaatgcaggatgacagaacctgcatctatcgaggaggaaaattcgtcgccgcctcttcctg |
44728760 |
T |
|
| Q |
121 |
aaataacacttggaattgacattggcagatcaccatgctgtgtttctgtgtggaatggttccagagtggagatttggaaagaaagtataaatgagatgat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44728759 |
aaataacacttggaattgacattggcagatcaccatgctgtgtttctgtgtggaatggttccagagtggagatttggaaagaaagtataaatgagatgat |
44728660 |
T |
|
| Q |
221 |
taagagatatttcgaaactttcgatcatgt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
44728659 |
taagagatatttcgaaactttcgatcatgt |
44728630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 42927634 - 42927576
Alignment:
| Q |
117 |
cctgaaataacacttggaattgacattggcagatcaccatgctgtgtttctgtgtggaa |
175 |
Q |
| |
|
||||||||| || |||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
42927634 |
cctgaaatagcaattggaattgacattggcacatcaccatgccgtgtttctgtgtggaa |
42927576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 21111423 - 21111362
Alignment:
| Q |
113 |
tcttcctgaaataacacttggaattgacattggcagatcaccatgctgtgtttctgtgtgga |
174 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||| |||| |||| |||||||| ||||||| |
|
|
| T |
21111423 |
tcttgctgaaatagcaattggaattgacattggcacatcaacatgttgtgtttccgtgtgga |
21111362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 39240938 - 39241023
Alignment:
| Q |
115 |
ttcctgaaataacacttggaattgacattggcagatcaccatgctgtgtttctgtgtggaatggttccagagtggagatttggaaa |
200 |
Q |
| |
|
||||||||||| || |||||||||| ||||||| |||| |||| |||| | || |||||||||||| ||||||||||| |||| |
|
|
| T |
39240938 |
ttcctgaaatagcagttggaattgatattggcacctcacaatgcagtgtagcagtatggaatggttcccaagtggagattttgaaa |
39241023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University