View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20555_low_25 (Length: 250)
Name: NF20555_low_25
Description: NF20555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20555_low_25 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 41118300 - 41118058
Alignment:
| Q |
8 |
gaacagagagggcgggggatgtgcttacttactatgaatttgatttgttgtagggtctttacaagtcatcagggattttctgcactcaatgtggggctga |
107 |
Q |
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| T |
41118300 |
gaacagagggggcgggggatgtgcttacttactatgaatttgatttgttgtagggtctttacaagtcatctgggattttctgcactcaatgtggggctga |
41118201 |
T |
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| Q |
108 |
aggcttccgtaaaattacattttatctggtttgcatcttagagaagttaatatgatgatcaaatcttaactttcttaaaatttatttccaacatcaaatt |
207 |
Q |
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| T |
41118200 |
aggcttccgtaaaattacattttatcaggtttgcatcttagagaagttaatatgatgatcaaatcttaactttcttaaaatttatttccaacatcaaatg |
41118101 |
T |
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| Q |
208 |
agagtttttatactgattttccaggatgcaggtcccattgccc |
250 |
Q |
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| T |
41118100 |
agagtttttatactgattttccaggatgcaggtcccattgccc |
41118058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 41107822 - 41107635
Alignment:
| Q |
18 |
ggcgggggatgtgcttacttactatgaatttgatttgttgtagggtctttacaagtcatcagggattttctgcactcaatgtggggctgaaggcttccgt |
117 |
Q |
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| T |
41107822 |
ggcggggaatgtgtctacttaatataaatttgatttttcgtagggtctttacaagtcatctgggaatttctgtactcaatgtgaggctgaaggcttccgt |
41107723 |
T |
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| Q |
118 |
aaaattacattttatctggtttgcatcttagagaagttaatatgatgatcaaatcttaactttcttaaaatttatttccaacatcaaatta |
208 |
Q |
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| T |
41107722 |
aaaattacattttatcaggtttgcatcttagaggagttaatatgatgatcaga--tttacttccttaaaattaatttcc-acatcaaatta |
41107635 |
T |
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